Analysis of interatomic Contacts of Structural Units in PDB entry:
7W79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W79 entry

There are 2 chains in PDB entry 7W79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3LEU 218
B
 MET 1ALA 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7W79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 57Right-handed alpha
Helix 2
AA2
A
76 84Right-handed alpha
Helix 3
AA3
A
99 111Right-handed alpha
Helix 4
AA4
A
116 127Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
141 154Right-handed alpha
Helix 7
AA7
A
171 189Right-handed alpha
Helix 8
AA8
A
199 206Right-handed 310
Helix 9
AA9
B
2 11Right-handed alpha
Helix 10
AB1
B
11 50Right-handed alpha
Helix 11
AB2
B
66 70Right-handed 310
Helix 12
AB3
B
75 80Right-handed alpha
Helix 13
AB4
B
129 136Right-handed alpha
Helix 14
AB5
B
171 179Right-handed alpha
Helix 15
AB6
B
206 210Right-handed alpha
Helix 16
AB7
B
213 248Right-handed alpha
Helix 17
AB8
B
249 260Right-handed alpha
Helix 18
AB9
B
262 295Right-handed alpha
Helix 19
AC1
B
309 333Right-handed alpha
Helix 20
AC2
B
335 340Right-handed alpha
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There are 4 sheets in PDB entry 7W79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 33first strand
Strand 2
A
7 18anti-parallel
Strand 3
A
64 69anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
160 164parallel
Strand 3
A
192 196parallel
Strand 4
A
38 43parallel
Strand 5
A
209 213parallel
Strand 6
A
216 217anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
164 170anti-parallel
Strand 3
B
99 107parallel
Strand 4
B
83 94anti-parallel
Strand 5
B
186 189anti-parallel
Strand 6
B
54 58anti-parallel
Strand 7
B
201 205anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
164 170anti-parallel
Strand 3
B
125 128anti-parallel
Strand 4
B
148 156parallel
Strand 5
B
142 145anti-parallel
Strand 6
B
83 94anti-parallel
Strand 7
B
186 189anti-parallel
Strand 8
B
54 58anti-parallel
Strand 9
B
201 205anti-parallel
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