Analysis of interatomic Contacts of Structural Units in PDB entry:
7W7C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W7C entry

There are 2 chains in PDB entry 7W7C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 222
B
 MET 1ALA 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 7W7C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 57Right-handed alpha
Helix 2
AA2
A
76 84Right-handed alpha
Helix 3
AA3
A
99 111Right-handed alpha
Helix 4
AA4
A
116 127Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
141 156Right-handed alpha
Helix 7
AA7
A
171 189Right-handed alpha
Helix 8
AA8
A
199 206Right-handed 310
Helix 9
AA9
B
2 11Right-handed alpha
Helix 10
AB1
B
11 37Right-handed alpha
Helix 11
AB2
B
222 260Right-handed alpha
Helix 12
AB3
B
262 297Right-handed alpha
Helix 13
AB4
B
306 329Right-handed alpha
Helix 14
AB5
B
335 341Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 7W7C. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 33first strand
Strand 2
A
7 18anti-parallel
Strand 3
A
64 69anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
160 164parallel
Strand 3
A
192 196parallel
Strand 4
A
38 42parallel
Strand 5
A
208 213parallel
Strand 6
A
216 220anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il