Analysis of interatomic Contacts of Structural Units in PDB entry:
7W81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W81 entry

There are 2 chains in PDB entry 7W81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 476ASN 656
B
 ASN 476ILE 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 7W81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
476 481Right-handed alpha
Helix 2
AA2
A
481 487Right-handed alpha
Helix 3
AA3
A
489 501Right-handed alpha
Helix 4
AA4
A
502 504Right-handed 310
Helix 5
AA5
A
505 507Right-handed 310
Helix 6
AA6
A
508 534Right-handed alpha
Helix 7
AA7
A
563 569Right-handed 310
Helix 8
AA8
A
590 592Right-handed 310
Helix 9
AA9
A
611 614Right-handed 310
Helix 10
AB1
A
638 641Right-handed 310
Helix 11
AB2
B
477 481Right-handed alpha
Helix 12
AB3
B
481 487Right-handed alpha
Helix 13
AB4
B
489 501Right-handed alpha
Helix 14
AB5
B
502 504Right-handed 310
Helix 15
AB6
B
505 507Right-handed 310
Helix 16
AB7
B
508 534Right-handed alpha
Helix 17
AB8
B
563 568Right-handed alpha
Helix 18
AB9
B
590 592Right-handed 310
Helix 19
AC1
B
611 614Right-handed 310
Helix 20
AC2
B
638 641Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7W81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
574 578anti-parallel
Strand 3
A
581 587anti-parallel
Strand 4
A
615 621anti-parallel
Strand 5
A
605 610anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 556first strand
Strand 2
A
642 652anti-parallel
Strand 3
A
628 637anti-parallel
Strand 4
A
594 599anti-parallel
Strand 5
A
602 603anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 550first strand
Strand 2
B
573 578anti-parallel
Strand 3
B
581 587anti-parallel
Strand 4
B
615 621anti-parallel
Strand 5
B
605 610anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 556first strand
Strand 2
B
642 652anti-parallel
Strand 3
B
628 637anti-parallel
Strand 4
B
594 599anti-parallel
Strand 5
B
602 603anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il