Analysis of interatomic Contacts of Structural Units in PDB entry:
7W88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W88 entry

There is 1 chain in PDB entry 7W88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 112CYS 1111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7W88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
141 143Right-handed 310
Helix 2
AA2
A
290 304Right-handed alpha
Helix 3
AA3
A
313 319Right-handed alpha
Helix 4
AA4
A
323 335Right-handed alpha
Helix 5
AA5
A
343 353Right-handed alpha
Helix 6
AA6
A
395 401Right-handed alpha
Helix 7
AA7
A
402 408Right-handed 310
Helix 8
AA8
A
422 427Right-handed alpha
Helix 9
AA9
A
441 453Right-handed alpha
Helix 10
AB1
A
487 496Right-handed alpha
Helix 11
AB2
A
503 510Right-handed alpha
Helix 12
AB3
A
511 513Right-handed 310
Helix 13
AB4
A
554 566Right-handed alpha
Helix 14
AB5
A
627 636Right-handed alpha
Helix 15
AB6
A
641 651Right-handed alpha
Helix 16
AB7
A
665 670Right-handed alpha
Helix 17
AB8
A
671 673Right-handed 310
Helix 18
AB9
A
694 715Right-handed alpha
Helix 19
AC1
A
747 752Right-handed alpha
Helix 20
AC2
A
794 800Right-handed alpha
Helix 21
AC3
A
815 821Right-handed alpha
Helix 22
AC4
A
862 874Right-handed alpha
Helix 23
AC5
A
878 892Right-handed alpha
Helix 24
AC6
A
899 909Right-handed alpha
Helix 25
AC7
A
950 956Right-handed alpha
Helix 26
AC8
A
997 1009Right-handed alpha
Helix 27
AC9
A
1017 1022Right-handed alpha
Helix 28
AD1
A
1039 1060Right-handed alpha
Helix 29
AD2
A
1073 1078Right-handed alpha
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There are 12 sheets in PDB entry 7W88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
237 239anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
145 149anti-parallel
Strand 3
A
159 162anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
183 184anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
220 221anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
390 392anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 386first strand
Strand 2
A
377 379anti-parallel
Strand 3
A
411 413parallel
Strand 4
A
476 481anti-parallel
Strand 5
A
460 466anti-parallel
Strand 6
A
455 457anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
597 598parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 539first strand
Strand 2
A
542 544anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
587 588anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 727first strand
Strand 2
A
805 806parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
739 740first strand
Strand 2
A
787 791parallel
Strand 3
A
772 776anti-parallel
Strand 4
A
831 832anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 745first strand
Strand 2
A
766 767anti-parallel
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