Analysis of interatomic Contacts of Structural Units in PDB entry:
7W8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W8F entry

There is 1 chain in PDB entry 7W8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5GLN 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7W8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 37Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
73 81Right-handed alpha
Helix 4
AA4
A
88 93Right-handed 310
Helix 5
AA5
A
94 100Right-handed alpha
Helix 6
AA6
A
115 131Right-handed alpha
Helix 7
AA7
A
133 158Right-handed alpha
Helix 8
AA8
A
183 192Right-handed alpha
Helix 9
AA9
A
213 219Right-handed 310
Helix 10
AB1
A
230 240Right-handed alpha
Helix 11
AB2
A
240 246Right-handed alpha
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
265 282Right-handed alpha
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There are 3 sheets in PDB entry 7W8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
12 15anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
43 44parallel
Strand 3
A
23 25parallel
Strand 4
A
84 87parallel
Strand 5
A
104 106parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
175 179anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
222 227parallel
Strand 5
A
254 259parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il