Analysis of interatomic Contacts of Structural Units in PDB entry:
7W9X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W9X entry

There are 2 chains in PDB entry 7W9X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 387
B
 MET 1SER 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7W9X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 20Right-handed 310
Helix 2
AA2
A
21 27Right-handed alpha
Helix 3
AA3
A
40 46Right-handed alpha
Helix 4
AA4
A
46 58Right-handed alpha
Helix 5
AA5
A
73 87Right-handed alpha
Helix 6
AA6
A
97 111Right-handed alpha
Helix 7
AA7
A
117 122Right-handed alpha
Helix 8
AA8
A
143 147Right-handed 310
Helix 9
AA9
A
166 169Right-handed 310
Helix 10
AB1
A
176 181Right-handed 310
Helix 11
AB2
A
184 204Right-handed alpha
Helix 12
AB3
A
210 232Right-handed alpha
Helix 13
AB4
A
237 253Right-handed alpha
Helix 14
AB5
A
264 275Right-handed alpha
Helix 15
AB6
A
280 296Right-handed alpha
Helix 16
AB7
A
297 299Right-handed 310
Helix 17
AB8
A
300 311Right-handed alpha
Helix 18
AB9
A
320 339Right-handed alpha
Helix 19
AC1
A
344 349Right-handed 310
Helix 20
AC2
A
354 363Right-handed alpha
Helix 21
AC3
A
375 386Right-handed alpha
Helix 22
AC4
B
17 20Right-handed 310
Helix 23
AC5
B
21 27Right-handed alpha
Helix 24
AC6
B
40 46Right-handed alpha
Helix 25
AC7
B
46 58Right-handed alpha
Helix 26
AC8
B
73 87Right-handed alpha
Helix 27
AC9
B
97 111Right-handed alpha
Helix 28
AD1
B
117 122Right-handed alpha
Helix 29
AD2
B
143 147Right-handed 310
Helix 30
AD3
B
166 169Right-handed 310
Helix 31
AD4
B
177 181Right-handed 310
Helix 32
AD5
B
184 204Right-handed alpha
Helix 33
AD6
B
210 233Right-handed alpha
Helix 34
AD7
B
237 249Right-handed alpha
Helix 35
AD8
B
264 274Right-handed alpha
Helix 36
AD9
B
280 297Right-handed alpha
Helix 37
AE1
B
300 311Right-handed alpha
Helix 38
AE2
B
320 339Right-handed alpha
Helix 39
AE3
B
344 349Right-handed 310
Helix 40
AE4
B
354 363Right-handed alpha
Helix 41
AE5
B
378 386Right-handed alpha
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There are 3 sheets in PDB entry 7W9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
32 37parallel
Strand 3
A
91 96parallel
Strand 4
A
133 137parallel
Strand 5
A
172 175parallel
Strand 6
A
4 14parallel
Strand 7
B
4 14anti-parallel
Strand 8
B
172 175parallel
Strand 9
B
133 137parallel
Strand 10
B
91 96parallel
Strand 11
B
32 37parallel
Strand 12
B
61 65parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
159 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 154first strand
Strand 2
B
159 164anti-parallel
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