Analysis of interatomic Contacts of Structural Units in PDB entry:
7WAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WAA entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 7WAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3SER 68
A
 ALA 70ARG 325
B
 THR 3SER 68
B
 ALA 70ARG 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7WAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 41Right-handed 310
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
80 85Right-handed alpha
Helix 5
AA5
A
89 93Right-handed 310
Helix 6
AA6
A
95 103Right-handed alpha
Helix 7
AA7
A
124 126Right-handed 310
Helix 8
AA8
A
149 155Right-handed 310
Helix 9
AA9
A
156 164Right-handed alpha
Helix 10
AB1
A
182 186Right-handed 310
Helix 11
AB2
A
188 192Right-handed 310
Helix 12
AB3
A
202 206Right-handed 310
Helix 13
AB4
A
207 235Right-handed alpha
Helix 14
AB5
A
256 258Right-handed 310
Helix 15
AB6
A
265 269Right-handed 310
Helix 16
AB7
A
270 274Right-handed 310
Helix 17
AB8
A
284 287Right-handed 310
Helix 18
AB9
A
301 310Right-handed alpha
Helix 19
AC1
A
314 318Right-handed 310
Helix 20
AC2
B
33 41Right-handed 310
Helix 21
AC3
B
49 53Right-handed 310
Helix 22
AC4
B
68 77Right-handed alpha
Helix 23
AC5
B
89 93Right-handed 310
Helix 24
AC6
B
95 103Right-handed alpha
Helix 25
AC7
B
124 126Right-handed 310
Helix 26
AC8
B
149 155Right-handed 310
Helix 27
AC9
B
156 164Right-handed alpha
Helix 28
AD1
B
182 186Right-handed 310
Helix 29
AD2
B
188 192Right-handed 310
Helix 30
AD3
B
202 206Right-handed 310
Helix 31
AD4
B
207 235Right-handed alpha
Helix 32
AD5
B
256 258Right-handed 310
Helix 33
AD6
B
270 274Right-handed 310
Helix 34
AD7
B
284 287Right-handed 310
Helix 35
AD8
B
301 310Right-handed alpha
Helix 36
AD9
B
314 318Right-handed 310
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There are 8 sheets in PDB entry 7WAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
312 313anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
241 248anti-parallel
Strand 4
A
22 29parallel
Strand 5
A
169 174parallel
Strand 6
A
106 111parallel
Strand 7
A
128 130parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
297 298parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
260 261anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
312 313anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
278 282anti-parallel
Strand 3
B
241 248anti-parallel
Strand 4
B
22 29parallel
Strand 5
B
169 174parallel
Strand 6
B
106 111parallel
Strand 7
B
128 130parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
297 298parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
260 261anti-parallel
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