Analysis of interatomic Contacts of Structural Units in PDB entry:
7WAD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WAD entry

There are 4 chains in PDB entry 7WAD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 723
B	MET 1	ALA 723
C	MET 1	ALA 723
D	MET 1	ALA 723

There are116 helices in PDB entry 7WAD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	40	Right-handed 310
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	52	57	Right-handed 310
Helix 4	AA4	A	65	73	Right-handed alpha
Helix 5	AA5	A	76	92	Right-handed alpha
Helix 6	AA6	A	118	140	Right-handed alpha
Helix 7	AA7	A	143	161	Right-handed alpha
Helix 8	AA8	A	164	177	Right-handed alpha
Helix 9	AA9	A	194	198	Right-handed 310
Helix 10	AB1	A	210	219	Right-handed alpha
Helix 11	AB2	A	219	230	Right-handed alpha
Helix 12	AB3	A	242	254	Right-handed alpha
Helix 13	AB4	A	277	292	Right-handed alpha
Helix 14	AB5	A	335	345	Right-handed alpha
Helix 15	AB6	A	363	374	Right-handed alpha
Helix 16	AB7	A	405	408	Right-handed 310
Helix 17	AB8	A	409	424	Right-handed alpha
Helix 18	AB9	A	456	460	Right-handed 310
Helix 19	AC1	A	470	480	Right-handed alpha
Helix 20	AC2	A	498	513	Right-handed alpha
Helix 21	AC3	A	539	549	Right-handed alpha
Helix 22	AC4	A	560	568	Right-handed alpha
Helix 23	AC5	A	594	608	Right-handed alpha
Helix 24	AC6	A	621	626	Right-handed alpha
Helix 25	AC7	A	627	629	Right-handed 310
Helix 26	AC8	A	644	653	Right-handed alpha
Helix 27	AC9	A	682	686	Right-handed 310
Helix 28	AD1	A	690	706	Right-handed alpha
Helix 29	AD2	A	710	720	Right-handed alpha
Helix 30	AD3	B	36	40	Right-handed 310
Helix 31	AD4	B	42	51	Right-handed alpha
Helix 32	AD5	B	52	57	Right-handed 310
Helix 33	AD6	B	65	74	Right-handed alpha
Helix 34	AD7	B	76	92	Right-handed alpha
Helix 35	AD8	B	118	140	Right-handed alpha
Helix 36	AD9	B	143	161	Right-handed alpha
Helix 37	AE1	B	164	177	Right-handed alpha
Helix 38	AE2	B	194	198	Right-handed 310
Helix 39	AE3	B	210	219	Right-handed alpha
Helix 40	AE4	B	219	230	Right-handed alpha
Helix 41	AE5	B	242	254	Right-handed alpha
Helix 42	AE6	B	277	292	Right-handed alpha
Helix 43	AE7	B	335	345	Right-handed alpha
Helix 44	AE8	B	363	374	Right-handed alpha
Helix 45	AE9	B	405	408	Right-handed 310
Helix 46	AF1	B	409	424	Right-handed alpha
Helix 47	AF2	B	456	460	Right-handed 310
Helix 48	AF3	B	470	480	Right-handed alpha
Helix 49	AF4	B	498	513	Right-handed alpha
Helix 50	AF5	B	539	548	Right-handed alpha
Helix 51	AF6	B	560	568	Right-handed alpha
Helix 52	AF7	B	594	608	Right-handed alpha
Helix 53	AF8	B	621	626	Right-handed alpha
Helix 54	AF9	B	627	629	Right-handed 310
Helix 55	AG1	B	644	653	Right-handed alpha
Helix 56	AG2	B	682	686	Right-handed 310
Helix 57	AG3	B	690	706	Right-handed alpha
Helix 58	AG4	B	710	720	Right-handed alpha
Helix 59	AG5	C	36	40	Right-handed 310
Helix 60	AG6	C	42	51	Right-handed alpha
Helix 61	AG7	C	52	57	Right-handed 310
Helix 62	AG8	C	65	73	Right-handed alpha
Helix 63	AG9	C	76	92	Right-handed alpha
Helix 64	AH1	C	118	140	Right-handed alpha
Helix 65	AH2	C	143	161	Right-handed alpha
Helix 66	AH3	C	164	177	Right-handed alpha
Helix 67	AH4	C	194	198	Right-handed 310
Helix 68	AH5	C	210	219	Right-handed alpha
Helix 69	AH6	C	219	230	Right-handed alpha
Helix 70	AH7	C	242	254	Right-handed alpha
Helix 71	AH8	C	277	292	Right-handed alpha
Helix 72	AH9	C	335	345	Right-handed alpha
Helix 73	AI1	C	363	374	Right-handed alpha
Helix 74	AI2	C	405	408	Right-handed 310
Helix 75	AI3	C	409	424	Right-handed alpha
Helix 76	AI4	C	456	460	Right-handed 310
Helix 77	AI5	C	470	480	Right-handed alpha
Helix 78	AI6	C	498	513	Right-handed alpha
Helix 79	AI7	C	539	549	Right-handed alpha
Helix 80	AI8	C	560	568	Right-handed alpha
Helix 81	AI9	C	594	608	Right-handed alpha
Helix 82	AJ1	C	621	626	Right-handed alpha
Helix 83	AJ2	C	627	629	Right-handed 310
Helix 84	AJ3	C	644	653	Right-handed alpha
Helix 85	AJ4	C	682	686	Right-handed 310
Helix 86	AJ5	C	690	706	Right-handed alpha
Helix 87	AJ6	C	710	720	Right-handed alpha
Helix 88	AJ7	D	36	40	Right-handed 310
Helix 89	AJ8	D	42	51	Right-handed alpha
Helix 90	AJ9	D	52	57	Right-handed 310
Helix 91	AK1	D	65	73	Right-handed alpha
Helix 92	AK2	D	76	92	Right-handed alpha
Helix 93	AK3	D	118	140	Right-handed alpha
Helix 94	AK4	D	143	161	Right-handed alpha
Helix 95	AK5	D	164	177	Right-handed alpha
Helix 96	AK6	D	194	198	Right-handed 310
Helix 97	AK7	D	210	219	Right-handed alpha
Helix 98	AK8	D	219	230	Right-handed alpha
Helix 99	AK9	D	242	254	Right-handed alpha
Helix 100	AL1	D	277	292	Right-handed alpha
Helix 101	AL2	D	335	345	Right-handed alpha
Helix 102	AL3	D	363	374	Right-handed alpha
Helix 103	AL4	D	405	408	Right-handed 310
Helix 104	AL5	D	409	424	Right-handed alpha
Helix 105	AL6	D	456	460	Right-handed 310
Helix 106	AL7	D	470	480	Right-handed alpha
Helix 107	AL8	D	498	513	Right-handed alpha
Helix 108	AL9	D	539	548	Right-handed alpha
Helix 109	AM1	D	560	568	Right-handed alpha
Helix 110	AM2	D	594	608	Right-handed alpha
Helix 111	AM3	D	621	626	Right-handed alpha
Helix 112	AM4	D	627	629	Right-handed 310
Helix 113	AM5	D	644	653	Right-handed alpha
Helix 114	AM6	D	682	686	Right-handed 310
Helix 115	AM7	D	690	706	Right-handed alpha
Helix 116	AM8	D	710	720	Right-handed alpha

There are 24 sheets in PDB entry 7WAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	9	first strand
Strand 2	A	22	28	anti-parallel
Strand 3	A	109	115	anti-parallel
Strand 4	A	99	103	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	190	192	anti-parallel
Strand 3	A	199	201	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	297	301	anti-parallel
Strand 3	A	258	262	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	316	324	anti-parallel
Strand 3	A	306	313	anti-parallel
Strand 4	A	427	434	anti-parallel
Strand 5	A	447	452	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	386	388	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	534	first strand
Strand 2	A	524	527	anti-parallel
Strand 3	A	517	520	anti-parallel
Strand 4	A	554	558	parallel
Strand 5	A	490	494	parallel
Strand 6	A	574	579	parallel
Strand 7	A	609	618	parallel
Strand 8	A	634	638	parallel
Strand 9	A	657	660	parallel
Strand 10	A	665	668	anti-parallel
Strand 11	A	673	677	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	9	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	B	109	115	anti-parallel
Strand 4	B	99	103	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	190	192	anti-parallel
Strand 3	B	199	201	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	297	301	anti-parallel
Strand 3	B	258	262	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	316	324	anti-parallel
Strand 3	B	306	313	anti-parallel
Strand 4	B	427	434	anti-parallel
Strand 5	B	447	452	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	386	388	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	524	527	anti-parallel
Strand 3	B	517	520	anti-parallel
Strand 4	B	554	558	parallel
Strand 5	B	490	494	parallel
Strand 6	B	574	579	parallel
Strand 7	B	609	618	parallel
Strand 8	B	634	638	parallel
Strand 9	B	657	660	parallel
Strand 10	B	665	668	anti-parallel
Strand 11	B	673	677	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	9	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	C	109	115	anti-parallel
Strand 4	C	99	103	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	190	192	anti-parallel
Strand 3	C	199	201	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	297	301	anti-parallel
Strand 3	C	258	262	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	403	first strand
Strand 2	C	316	324	anti-parallel
Strand 3	C	306	313	anti-parallel
Strand 4	C	427	434	anti-parallel
Strand 5	C	447	452	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	386	388	anti-parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	524	527	anti-parallel
Strand 3	C	517	520	anti-parallel
Strand 4	C	554	558	parallel
Strand 5	C	490	494	parallel
Strand 6	C	574	579	parallel
Strand 7	C	609	618	parallel
Strand 8	C	634	638	parallel
Strand 9	C	657	660	parallel
Strand 10	C	665	668	anti-parallel
Strand 11	C	673	677	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	9	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	D	109	115	anti-parallel
Strand 4	D	99	103	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	190	192	anti-parallel
Strand 3	D	199	201	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	297	301	anti-parallel
Strand 3	D	258	262	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	403	first strand
Strand 2	D	316	324	anti-parallel
Strand 3	D	306	313	anti-parallel
Strand 4	D	427	434	anti-parallel
Strand 5	D	447	452	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	386	388	anti-parallel

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There are 11 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	534	first strand
Strand 2	D	524	527	anti-parallel
Strand 3	D	517	520	anti-parallel
Strand 4	D	554	558	parallel
Strand 5	D	490	494	parallel
Strand 6	D	574	579	parallel
Strand 7	D	609	618	parallel
Strand 8	D	634	638	parallel
Strand 9	D	657	660	parallel
Strand 10	D	665	668	anti-parallel
Strand 11	D	673	677	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WAD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WAD