Analysis of interatomic Contacts of Structural Units in PDB entry:
7WAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WAF entry

There are 8 chains in PDB entry 7WAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 877
B	MET 1	HIS 877
C	MET 1	SER 724
D	MET 1	SER 724
I	ASP 1	ASP 5
J	ASP 1	ASP 5
K	ASP 1	ASP 5
L	ASP 1	ASP 5

There are120 helices in PDB entry 7WAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	40	Right-handed 310
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	52	57	Right-handed 310
Helix 4	AA4	A	65	74	Right-handed alpha
Helix 5	AA5	A	76	92	Right-handed alpha
Helix 6	AA6	A	118	140	Right-handed alpha
Helix 7	AA7	A	143	161	Right-handed alpha
Helix 8	AA8	A	164	177	Right-handed alpha
Helix 9	AA9	A	194	198	Right-handed 310
Helix 10	AB1	A	210	219	Right-handed alpha
Helix 11	AB2	A	219	230	Right-handed alpha
Helix 12	AB3	A	244	254	Right-handed alpha
Helix 13	AB4	A	277	292	Right-handed alpha
Helix 14	AB5	A	335	345	Right-handed alpha
Helix 15	AB6	A	363	373	Right-handed alpha
Helix 16	AB7	A	405	408	Right-handed 310
Helix 17	AB8	A	409	424	Right-handed alpha
Helix 18	AB9	A	470	480	Right-handed alpha
Helix 19	AC1	A	498	513	Right-handed alpha
Helix 20	AC2	A	539	548	Right-handed alpha
Helix 21	AC3	A	560	568	Right-handed alpha
Helix 22	AC4	A	594	608	Right-handed alpha
Helix 23	AC5	A	621	627	Right-handed alpha
Helix 24	AC6	A	644	653	Right-handed alpha
Helix 25	AC7	A	682	686	Right-handed 310
Helix 26	AC8	A	690	707	Right-handed alpha
Helix 27	AC9	A	710	721	Right-handed alpha
Helix 28	AD1	A	749	761	Right-handed alpha
Helix 29	AD2	A	778	793	Right-handed alpha
Helix 30	AD3	A	810	826	Right-handed alpha
Helix 31	AD4	A	841	852	Right-handed alpha
Helix 32	AD5	A	865	876	Right-handed alpha
Helix 33	AD6	B	36	40	Right-handed 310
Helix 34	AD7	B	42	51	Right-handed alpha
Helix 35	AD8	B	52	57	Right-handed 310
Helix 36	AD9	B	65	74	Right-handed alpha
Helix 37	AE1	B	76	92	Right-handed alpha
Helix 38	AE2	B	118	140	Right-handed alpha
Helix 39	AE3	B	143	161	Right-handed alpha
Helix 40	AE4	B	164	177	Right-handed alpha
Helix 41	AE5	B	194	198	Right-handed 310
Helix 42	AE6	B	210	219	Right-handed alpha
Helix 43	AE7	B	219	230	Right-handed alpha
Helix 44	AE8	B	244	254	Right-handed alpha
Helix 45	AE9	B	277	292	Right-handed alpha
Helix 46	AF1	B	335	345	Right-handed alpha
Helix 47	AF2	B	363	373	Right-handed alpha
Helix 48	AF3	B	405	408	Right-handed 310
Helix 49	AF4	B	409	424	Right-handed alpha
Helix 50	AF5	B	470	480	Right-handed alpha
Helix 51	AF6	B	498	513	Right-handed alpha
Helix 52	AF7	B	539	548	Right-handed alpha
Helix 53	AF8	B	560	568	Right-handed alpha
Helix 54	AF9	B	594	608	Right-handed alpha
Helix 55	AG1	B	621	627	Right-handed alpha
Helix 56	AG2	B	644	653	Right-handed alpha
Helix 57	AG3	B	682	686	Right-handed 310
Helix 58	AG4	B	690	707	Right-handed alpha
Helix 59	AG5	B	710	721	Right-handed alpha
Helix 60	AG6	B	749	761	Right-handed alpha
Helix 61	AG7	B	778	793	Right-handed alpha
Helix 62	AG8	B	810	826	Right-handed alpha
Helix 63	AG9	B	841	852	Right-handed alpha
Helix 64	AH1	B	865	876	Right-handed alpha
Helix 65	AH2	C	42	51	Right-handed alpha
Helix 66	AH3	C	52	57	Right-handed 310
Helix 67	AH4	C	65	74	Right-handed alpha
Helix 68	AH5	C	76	92	Right-handed alpha
Helix 69	AH6	C	118	140	Right-handed alpha
Helix 70	AH7	C	143	161	Right-handed alpha
Helix 71	AH8	C	164	177	Right-handed alpha
Helix 72	AH9	C	194	198	Right-handed 310
Helix 73	AI1	C	210	219	Right-handed alpha
Helix 74	AI2	C	219	230	Right-handed alpha
Helix 75	AI3	C	245	254	Right-handed alpha
Helix 76	AI4	C	277	292	Right-handed alpha
Helix 77	AI5	C	335	345	Right-handed alpha
Helix 78	AI6	C	363	374	Right-handed alpha
Helix 79	AI7	C	381	384	Right-handed 310
Helix 80	AI8	C	405	408	Right-handed 310
Helix 81	AI9	C	409	424	Right-handed alpha
Helix 82	AJ1	C	470	480	Right-handed alpha
Helix 83	AJ2	C	498	513	Right-handed alpha
Helix 84	AJ3	C	539	549	Right-handed alpha
Helix 85	AJ4	C	560	568	Right-handed alpha
Helix 86	AJ5	C	594	608	Right-handed alpha
Helix 87	AJ6	C	621	626	Right-handed alpha
Helix 88	AJ7	C	627	629	Right-handed 310
Helix 89	AJ8	C	644	653	Right-handed alpha
Helix 90	AJ9	C	682	686	Right-handed 310
Helix 91	AK1	C	690	707	Right-handed alpha
Helix 92	AK2	C	710	721	Right-handed alpha
Helix 93	AK3	D	42	51	Right-handed alpha
Helix 94	AK4	D	52	57	Right-handed 310
Helix 95	AK5	D	65	74	Right-handed alpha
Helix 96	AK6	D	76	92	Right-handed alpha
Helix 97	AK7	D	118	140	Right-handed alpha
Helix 98	AK8	D	143	161	Right-handed alpha
Helix 99	AK9	D	164	177	Right-handed alpha
Helix 100	AL1	D	194	198	Right-handed 310
Helix 101	AL2	D	210	219	Right-handed alpha
Helix 102	AL3	D	219	230	Right-handed alpha
Helix 103	AL4	D	245	254	Right-handed alpha
Helix 104	AL5	D	277	292	Right-handed alpha
Helix 105	AL6	D	335	345	Right-handed alpha
Helix 106	AL7	D	363	374	Right-handed alpha
Helix 107	AL8	D	381	384	Right-handed 310
Helix 108	AL9	D	405	408	Right-handed 310
Helix 109	AM1	D	409	424	Right-handed alpha
Helix 110	AM2	D	470	480	Right-handed alpha
Helix 111	AM3	D	498	513	Right-handed alpha
Helix 112	AM4	D	539	549	Right-handed alpha
Helix 113	AM5	D	560	568	Right-handed alpha
Helix 114	AM6	D	594	608	Right-handed alpha
Helix 115	AM7	D	621	626	Right-handed alpha
Helix 116	AM8	D	627	629	Right-handed 310
Helix 117	AM9	D	644	653	Right-handed alpha
Helix 118	AN1	D	682	686	Right-handed 310
Helix 119	AN2	D	690	707	Right-handed alpha
Helix 120	AN3	D	710	721	Right-handed alpha

There are 26 sheets in PDB entry 7WAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	9	first strand
Strand 2	A	22	28	anti-parallel
Strand 3	A	109	115	anti-parallel
Strand 4	A	99	103	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	190	192	anti-parallel
Strand 3	A	199	201	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	297	301	anti-parallel
Strand 3	A	258	262	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	316	324	anti-parallel
Strand 3	A	306	313	anti-parallel
Strand 4	A	427	434	anti-parallel
Strand 5	A	447	453	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	386	388	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	534	first strand
Strand 2	A	524	527	anti-parallel
Strand 3	A	517	520	anti-parallel
Strand 4	A	554	558	parallel
Strand 5	A	490	494	parallel
Strand 6	A	574	579	parallel
Strand 7	A	609	618	parallel
Strand 8	A	634	639	parallel
Strand 9	A	657	660	parallel
Strand 10	A	665	668	anti-parallel
Strand 11	A	673	677	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	741	744	anti-parallel
Strand 3	A	858	861	parallel
Strand 4	A	767	771	parallel
Strand 5	A	795	798	parallel
Strand 6	A	835	838	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	9	first strand
Strand 2	B	22	28	anti-parallel
Strand 3	B	109	115	anti-parallel
Strand 4	B	99	103	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	190	192	anti-parallel
Strand 3	B	199	201	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	297	301	anti-parallel
Strand 3	B	258	262	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	316	324	anti-parallel
Strand 3	B	306	313	anti-parallel
Strand 4	B	427	434	anti-parallel
Strand 5	B	447	453	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	386	388	anti-parallel

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There are 11 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	524	527	anti-parallel
Strand 3	B	517	520	anti-parallel
Strand 4	B	554	558	parallel
Strand 5	B	490	494	parallel
Strand 6	B	574	579	parallel
Strand 7	B	609	618	parallel
Strand 8	B	634	639	parallel
Strand 9	B	657	660	parallel
Strand 10	B	665	668	anti-parallel
Strand 11	B	673	677	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	741	744	anti-parallel
Strand 3	B	858	861	parallel
Strand 4	B	767	771	parallel
Strand 5	B	795	798	parallel
Strand 6	B	835	838	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	9	first strand
Strand 2	C	22	28	anti-parallel
Strand 3	C	110	115	anti-parallel
Strand 4	C	99	103	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	190	192	anti-parallel
Strand 3	C	199	201	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	297	301	anti-parallel
Strand 3	C	258	262	anti-parallel
Strand 4	C	272	275	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	403	first strand
Strand 2	C	316	324	anti-parallel
Strand 3	C	306	313	anti-parallel
Strand 4	C	427	434	anti-parallel
Strand 5	C	447	453	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	386	388	anti-parallel

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There are 11 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	533	first strand
Strand 2	C	525	527	anti-parallel
Strand 3	C	517	520	anti-parallel
Strand 4	C	554	558	parallel
Strand 5	C	490	494	parallel
Strand 6	C	574	579	parallel
Strand 7	C	609	618	parallel
Strand 8	C	634	639	parallel
Strand 9	C	657	660	parallel
Strand 10	C	665	668	anti-parallel
Strand 11	C	673	677	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	9	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	D	110	115	anti-parallel
Strand 4	D	99	103	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	190	192	anti-parallel
Strand 3	D	199	201	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	297	301	anti-parallel
Strand 3	D	258	262	anti-parallel
Strand 4	D	272	275	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	403	first strand
Strand 2	D	316	324	anti-parallel
Strand 3	D	306	313	anti-parallel
Strand 4	D	427	434	anti-parallel
Strand 5	D	447	453	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	386	388	anti-parallel

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There are 11 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	533	first strand
Strand 2	D	525	527	anti-parallel
Strand 3	D	517	520	anti-parallel
Strand 4	D	554	558	parallel
Strand 5	D	490	494	parallel
Strand 6	D	574	579	parallel
Strand 7	D	609	618	parallel
Strand 8	D	634	639	parallel
Strand 9	D	657	660	parallel
Strand 10	D	665	668	anti-parallel
Strand 11	D	673	677	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WAF