Analysis of interatomic Contacts of Structural Units in PDB entry:
7WAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WAZ entry

There are 3 chains in PDB entry 7WAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4VAL 978
C
 C 1 C 12
D
 G 1 U 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7WAZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
38 46Right-handed alpha
Helix 3
AA3
A
60 92Right-handed alpha
Helix 4
AA4
A
92 100Right-handed alpha
Helix 5
AA5
A
196 201Right-handed alpha
Helix 6
AA6
A
210 215Right-handed alpha
Helix 7
AA7
A
222 272Right-handed alpha
Helix 8
AA8
A
287 309Right-handed alpha
Helix 9
AA9
A
343 368Right-handed alpha
Helix 10
AB1
A
372 378Right-handed alpha
Helix 11
AB2
A
384 389Right-handed alpha
Helix 12
AB3
A
394 411Right-handed alpha
Helix 13
AB4
A
413 442Right-handed alpha
Helix 14
AB5
A
446 466Right-handed alpha
Helix 15
AB6
A
467 469Right-handed 310
Helix 16
AB7
A
472 493Right-handed alpha
Helix 17
AB8
A
494 496Right-handed 310
Helix 18
AB9
A
589 596Right-handed alpha
Helix 19
AC1
A
697 717Right-handed alpha
Helix 20
AC2
A
725 750Right-handed alpha
Helix 21
AC3
A
770 774Right-handed 310
Helix 22
AC4
A
775 790Right-handed alpha
Helix 23
AC5
A
793 796Right-handed 310
Helix 24
AC6
A
818 829Right-handed alpha
Helix 25
AC7
A
866 875Right-handed alpha
Helix 26
AC8
A
881 885Right-handed 310
Helix 27
AC9
A
886 901Right-handed alpha
Helix 28
AD1
A
920 936Right-handed alpha
Helix 29
AD2
A
938 949Right-handed alpha
Helix 30
AD3
A
954 973Right-handed alpha
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There are 8 sheets in PDB entry 7WAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
643 645anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 545first strand
Strand 2
A
570 573anti-parallel
Strand 3
A
556 558anti-parallel
Strand 4
A
515 522anti-parallel
Strand 5
A
526 533anti-parallel
Strand 6
A
582 587anti-parallel
Strand 7
A
29 36anti-parallel
Strand 8
A
628 641anti-parallel
Strand 9
A
609 613anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 545first strand
Strand 2
A
570 573anti-parallel
Strand 3
A
556 558anti-parallel
Strand 4
A
515 522anti-parallel
Strand 5
A
526 533anti-parallel
Strand 6
A
582 587anti-parallel
Strand 7
A
29 36anti-parallel
Strand 8
A
628 641anti-parallel
Strand 9
A
618 623anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
138 145anti-parallel
Strand 3
A
151 158anti-parallel
Strand 4
A
168 172anti-parallel
Strand 5
A
184 185anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
135 136anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
691 693first strand
Strand 2
A
666 671anti-parallel
Strand 3
A
654 660anti-parallel
Strand 4
A
751 756parallel
Strand 5
A
798 801parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
830 832first strand
Strand 2
A
835 840anti-parallel
Strand 3
A
843 846anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 855first strand
Strand 2
A
860 865anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il