Analysis of interatomic Contacts of Structural Units in PDB entry:
7WBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WBJ entry

There are 6 chains in PDB entry 7WBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ARG 26	ARG 393
L	HIS 1	LEU 27
A	THR 9	LEU 394
B	GLU 3	SER 342
G	SER 8	ARG 62
N	GLN 1	SER 128

There are 29 helices in PDB entry 7WBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	31	38	Right-handed alpha
Helix 2	AA2	R	104	110	Right-handed alpha
Helix 3	AA3	R	115	151	Right-handed alpha
Helix 4	AA4	R	152	155	Right-handed 310
Helix 5	AA5	R	156	182	Right-handed alpha
Helix 6	AA6	R	196	219	Right-handed alpha
Helix 7	AA7	R	220	230	Right-handed alpha
Helix 8	AA8	R	239	261	Right-handed alpha
Helix 9	AA9	R	278	311	Right-handed alpha
Helix 10	AB1	R	323	338	Right-handed alpha
Helix 11	AB2	R	339	343	Right-handed 310
Helix 12	AB3	R	354	362	Right-handed alpha
Helix 13	AB4	R	363	367	Right-handed 310
Helix 14	AB5	R	368	376	Right-handed alpha
Helix 15	AB6	R	379	393	Right-handed alpha
Helix 16	AB7	L	2	27	Right-handed alpha
Helix 17	AB8	A	10	40	Right-handed alpha
Helix 18	AB9	A	52	62	Right-handed alpha
Helix 19	AC1	A	265	278	Right-handed alpha
Helix 20	AC2	A	293	301	Right-handed alpha
Helix 21	AC3	A	302	304	Right-handed 310
Helix 22	AC4	A	312	318	Right-handed 310
Helix 23	AC5	A	331	352	Right-handed alpha
Helix 24	AC6	A	369	391	Right-handed alpha
Helix 25	AC7	B	4	26	Right-handed alpha
Helix 26	AC8	B	31	35	Right-handed 310
Helix 27	AC9	G	9	24	Right-handed alpha
Helix 28	AD1	G	29	35	Right-handed alpha
Helix 29	AD2	G	36	44	Right-handed alpha

There are 13 sheets in PDB entry 7WBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	56	57	first strand
Strand 2	R	60	61	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	91	93	first strand
Strand 2	R	98	101	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	214	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	360	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	223	224	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	123	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	166	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	202	203	anti-parallel
Strand 3	B	207	209	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	82	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WBJ