Analysis of interatomic Contacts of Structural Units in PDB entry:
7WBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WBM entry

There are 2 chains in PDB entry 7WBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 16ASN 430
B
 MET 16ASN 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 7WBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
39 49Right-handed alpha
Helix 4
AA4
A
61 71Right-handed alpha
Helix 5
AA5
A
78 81Right-handed 310
Helix 6
AA6
A
97 101Right-handed 310
Helix 7
AA7
A
110 117Right-handed alpha
Helix 8
AA8
A
165 169Right-handed alpha
Helix 9
AA9
A
183 188Right-handed 310
Helix 10
AB1
A
193 202Right-handed alpha
Helix 11
AB2
A
241 268Right-handed alpha
Helix 12
AB3
A
281 283Right-handed 310
Helix 13
AB4
A
292 311Right-handed alpha
Helix 14
AB5
A
325 337Right-handed alpha
Helix 15
AB6
A
356 363Right-handed alpha
Helix 16
AB7
A
385 394Right-handed alpha
Helix 17
AB8
A
395 400Right-handed alpha
Helix 18
AB9
A
405 412Right-handed 310
Helix 19
AC1
B
20 32Right-handed alpha
Helix 20
AC2
B
39 49Right-handed alpha
Helix 21
AC3
B
61 71Right-handed alpha
Helix 22
AC4
B
78 81Right-handed 310
Helix 23
AC5
B
110 118Right-handed alpha
Helix 24
AC6
B
165 169Right-handed alpha
Helix 25
AC7
B
180 188Right-handed 310
Helix 26
AC8
B
193 202Right-handed alpha
Helix 27
AC9
B
241 268Right-handed alpha
Helix 28
AD1
B
281 283Right-handed 310
Helix 29
AD2
B
287 289Right-handed 310
Helix 30
AD3
B
292 311Right-handed alpha
Helix 31
AD4
B
325 338Right-handed alpha
Helix 32
AD5
B
356 363Right-handed alpha
Helix 33
AD6
B
385 394Right-handed alpha
Helix 34
AD7
B
395 400Right-handed alpha
Helix 35
AD8
B
405 412Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 7WBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
316 322parallel
Strand 3
A
271 274parallel
Strand 4
A
364 370parallel
Strand 5
A
141 154parallel
Strand 6
A
120 131anti-parallel
Strand 7
A
51 55anti-parallel
Strand 8
A
414 419parallel
Strand 9
A
425 429anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
239 240anti-parallel
Strand 3
A
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
228 229anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
290 291anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
316 322parallel
Strand 3
B
271 274parallel
Strand 4
B
364 370parallel
Strand 5
B
141 154parallel
Strand 6
B
120 131anti-parallel
Strand 7
B
51 55anti-parallel
Strand 8
B
414 419parallel
Strand 9
B
425 428anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
239 240anti-parallel
Strand 3
B
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 222first strand
Strand 2
B
228 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 286first strand
Strand 2
B
290 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il