Analysis of interatomic Contacts of Structural Units in PDB entry:
7WCM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WCM entry

There are 5 chains in PDB entry 7WCM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	SER 13	ASN 351
C	SER 8	ARG 62
N	GLN 1	HIS 129
R	PHE 5	VAL 300

There are 33 helices in PDB entry 7WCM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	40	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	234	239	Right-handed 310
Helix 4	AA4	A	264	278	Right-handed alpha
Helix 5	AA5	A	279	283	Right-handed 310
Helix 6	AA6	A	293	303	Right-handed alpha
Helix 7	AA7	A	312	318	Right-handed 310
Helix 8	AA8	A	331	350	Right-handed alpha
Helix 9	AA9	A	369	391	Right-handed alpha
Helix 10	AB1	B	14	37	Right-handed alpha
Helix 11	AB2	B	40	45	Right-handed alpha
Helix 12	AB3	B	46	48	Right-handed 310
Helix 13	AB4	C	9	23	Right-handed alpha
Helix 14	AB5	C	29	44	Right-handed alpha
Helix 15	AB6	C	45	48	Right-handed 310
Helix 16	AB7	C	55	59	Right-handed 310
Helix 17	AB8	N	28	32	Right-handed 310
Helix 18	AB9	N	62	65	Right-handed 310
Helix 19	AC1	N	87	91	Right-handed 310
Helix 20	AC2	R	6	36	Right-handed alpha
Helix 21	AC3	R	38	60	Right-handed alpha
Helix 22	AC4	R	62	68	Right-handed alpha
Helix 23	AC5	R	74	109	Right-handed alpha
Helix 24	AC6	R	109	117	Right-handed alpha
Helix 25	AC7	R	118	139	Right-handed alpha
Helix 26	AC8	R	140	143	Right-handed 310
Helix 27	AC9	R	163	173	Right-handed alpha
Helix 28	AD1	R	173	210	Right-handed alpha
Helix 29	AD2	R	221	236	Right-handed alpha
Helix 30	AD3	R	238	251	Right-handed alpha
Helix 31	AD4	R	255	263	Right-handed alpha
Helix 32	AD5	R	263	280	Right-handed alpha
Helix 33	AD6	R	283	300	Right-handed alpha

There are 10 sheets in PDB entry 7WCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	287	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	347	351	anti-parallel
Strand 3	B	338	342	anti-parallel
Strand 4	B	326	331	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	74	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	100	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	116	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	131	136	anti-parallel
Strand 4	B	145	151	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	186	191	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	218	223	anti-parallel
Strand 4	B	228	234	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	245	first strand
Strand 2	B	251	256	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	270	275	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	289	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WCM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WCM