Analysis of interatomic Contacts of Structural Units in PDB entry:
7WD3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WD3 entry

There are 6 chains in PDB entry 7WD3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 29	SER 776
B	LYS 29	SER 776
C	LYS 29	SER 776
D	LYS 29	SER 776
E	LYS 29	SER 776
F	LYS 29	SER 776

There are182 helices in PDB entry 7WD3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	61	Right-handed alpha
Helix 2	AA2	A	98	104	Right-handed alpha
Helix 3	AA3	A	144	154	Right-handed alpha
Helix 4	AA4	A	233	237	Right-handed 310
Helix 5	AA5	A	250	267	Right-handed alpha
Helix 6	AA6	A	267	275	Right-handed alpha
Helix 7	AA7	A	291	302	Right-handed alpha
Helix 8	AA8	A	319	337	Right-handed alpha
Helix 9	AA9	A	346	351	Right-handed alpha
Helix 10	AB1	A	363	376	Right-handed alpha
Helix 11	AB2	A	396	401	Right-handed alpha
Helix 12	AB3	A	415	430	Right-handed alpha
Helix 13	AB4	A	431	435	Right-handed 310
Helix 14	AB5	A	438	449	Right-handed alpha
Helix 15	AB6	A	454	477	Right-handed alpha
Helix 16	AB7	A	480	485	Right-handed alpha
Helix 17	AB8	A	487	498	Right-handed alpha
Helix 18	AB9	A	514	519	Right-handed alpha
Helix 19	AC1	A	522	538	Right-handed alpha
Helix 20	AC2	A	538	546	Right-handed alpha
Helix 21	AC3	A	562	574	Right-handed alpha
Helix 22	AC4	A	583	588	Right-handed alpha
Helix 23	AC5	A	592	608	Right-handed alpha
Helix 24	AC6	A	630	645	Right-handed alpha
Helix 25	AC7	A	661	665	Right-handed 310
Helix 26	AC8	A	685	700	Right-handed alpha
Helix 27	AC9	A	702	706	Right-handed 310
Helix 28	AD1	A	708	716	Right-handed alpha
Helix 29	AD2	A	720	738	Right-handed alpha
Helix 30	AD3	A	746	757	Right-handed alpha
Helix 31	AD4	A	762	776	Right-handed alpha
Helix 32	AD5	B	54	61	Right-handed alpha
Helix 33	AD6	B	98	104	Right-handed alpha
Helix 34	AD7	B	144	153	Right-handed alpha
Helix 35	AD8	B	233	237	Right-handed 310
Helix 36	AD9	B	250	267	Right-handed alpha
Helix 37	AE1	B	267	275	Right-handed alpha
Helix 38	AE2	B	291	302	Right-handed alpha
Helix 39	AE3	B	319	337	Right-handed alpha
Helix 40	AE4	B	346	351	Right-handed alpha
Helix 41	AE5	B	364	377	Right-handed alpha
Helix 42	AE6	B	415	431	Right-handed alpha
Helix 43	AE7	B	438	449	Right-handed alpha
Helix 44	AE8	B	454	477	Right-handed alpha
Helix 45	AE9	B	487	498	Right-handed alpha
Helix 46	AF1	B	514	518	Right-handed 310
Helix 47	AF2	B	522	533	Right-handed alpha
Helix 48	AF3	B	538	546	Right-handed alpha
Helix 49	AF4	B	562	574	Right-handed alpha
Helix 50	AF5	B	583	588	Right-handed alpha
Helix 51	AF6	B	592	608	Right-handed alpha
Helix 52	AF7	B	618	622	Right-handed 310
Helix 53	AF8	B	630	645	Right-handed alpha
Helix 54	AF9	B	661	665	Right-handed 310
Helix 55	AG1	B	685	697	Right-handed alpha
Helix 56	AG2	B	702	706	Right-handed 310
Helix 57	AG3	B	708	716	Right-handed alpha
Helix 58	AG4	B	720	738	Right-handed alpha
Helix 59	AG5	B	746	757	Right-handed alpha
Helix 60	AG6	B	762	776	Right-handed alpha
Helix 61	AG7	C	54	61	Right-handed alpha
Helix 62	AG8	C	99	104	Right-handed alpha
Helix 63	AG9	C	144	153	Right-handed alpha
Helix 64	AH1	C	233	237	Right-handed 310
Helix 65	AH2	C	250	267	Right-handed alpha
Helix 66	AH3	C	267	275	Right-handed alpha
Helix 67	AH4	C	291	303	Right-handed alpha
Helix 68	AH5	C	311	315	Right-handed 310
Helix 69	AH6	C	319	337	Right-handed alpha
Helix 70	AH7	C	346	351	Right-handed alpha
Helix 71	AH8	C	363	375	Right-handed alpha
Helix 72	AH9	C	396	401	Right-handed alpha
Helix 73	AI1	C	415	431	Right-handed alpha
Helix 74	AI2	C	438	448	Right-handed alpha
Helix 75	AI3	C	454	477	Right-handed alpha
Helix 76	AI4	C	487	498	Right-handed alpha
Helix 77	AI5	C	522	538	Right-handed alpha
Helix 78	AI6	C	538	546	Right-handed alpha
Helix 79	AI7	C	562	574	Right-handed alpha
Helix 80	AI8	C	582	590	Right-handed alpha
Helix 81	AI9	C	593	608	Right-handed alpha
Helix 82	AJ1	C	618	622	Right-handed 310
Helix 83	AJ2	C	630	645	Right-handed alpha
Helix 84	AJ3	C	661	665	Right-handed 310
Helix 85	AJ4	C	685	698	Right-handed alpha
Helix 86	AJ5	C	702	706	Right-handed 310
Helix 87	AJ6	C	708	716	Right-handed alpha
Helix 88	AJ7	C	720	737	Right-handed alpha
Helix 89	AJ8	C	746	757	Right-handed alpha
Helix 90	AJ9	C	762	776	Right-handed alpha
Helix 91	AK1	D	54	61	Right-handed alpha
Helix 92	AK2	D	98	104	Right-handed alpha
Helix 93	AK3	D	144	152	Right-handed alpha
Helix 94	AK4	D	169	173	Right-handed 310
Helix 95	AK5	D	233	237	Right-handed 310
Helix 96	AK6	D	250	267	Right-handed alpha
Helix 97	AK7	D	267	275	Right-handed alpha
Helix 98	AK8	D	291	303	Right-handed alpha
Helix 99	AK9	D	319	337	Right-handed alpha
Helix 100	AL1	D	346	351	Right-handed alpha
Helix 101	AL2	D	363	375	Right-handed alpha
Helix 102	AL3	D	396	401	Right-handed alpha
Helix 103	AL4	D	415	431	Right-handed alpha
Helix 104	AL5	D	438	449	Right-handed alpha
Helix 105	AL6	D	454	477	Right-handed alpha
Helix 106	AL7	D	487	498	Right-handed alpha
Helix 107	AL8	D	514	519	Right-handed alpha
Helix 108	AL9	D	522	538	Right-handed alpha
Helix 109	AM1	D	538	546	Right-handed alpha
Helix 110	AM2	D	562	574	Right-handed alpha
Helix 111	AM3	D	582	588	Right-handed alpha
Helix 112	AM4	D	592	608	Right-handed alpha
Helix 113	AM5	D	618	622	Right-handed 310
Helix 114	AM6	D	630	645	Right-handed alpha
Helix 115	AM7	D	661	665	Right-handed 310
Helix 116	AM8	D	685	698	Right-handed alpha
Helix 117	AM9	D	702	706	Right-handed 310
Helix 118	AN1	D	708	716	Right-handed alpha
Helix 119	AN2	D	720	738	Right-handed alpha
Helix 120	AN3	D	746	757	Right-handed alpha
Helix 121	AN4	D	763	776	Right-handed alpha
Helix 122	AN5	E	54	61	Right-handed alpha
Helix 123	AN6	E	99	104	Right-handed alpha
Helix 124	AN7	E	144	154	Right-handed alpha
Helix 125	AN8	E	233	237	Right-handed 310
Helix 126	AN9	E	250	267	Right-handed alpha
Helix 127	AO1	E	267	275	Right-handed alpha
Helix 128	AO2	E	291	302	Right-handed alpha
Helix 129	AO3	E	319	337	Right-handed alpha
Helix 130	AO4	E	346	351	Right-handed alpha
Helix 131	AO5	E	363	377	Right-handed alpha
Helix 132	AO6	E	396	401	Right-handed alpha
Helix 133	AO7	E	415	431	Right-handed alpha
Helix 134	AO8	E	438	449	Right-handed alpha
Helix 135	AO9	E	454	477	Right-handed alpha
Helix 136	AP1	E	480	485	Right-handed alpha
Helix 137	AP2	E	487	498	Right-handed alpha
Helix 138	AP3	E	514	519	Right-handed alpha
Helix 139	AP4	E	522	530	Right-handed alpha
Helix 140	AP5	E	532	538	Right-handed alpha
Helix 141	AP6	E	538	546	Right-handed alpha
Helix 142	AP7	E	562	574	Right-handed alpha
Helix 143	AP8	E	582	588	Right-handed alpha
Helix 144	AP9	E	593	608	Right-handed alpha
Helix 145	AQ1	E	618	622	Right-handed 310
Helix 146	AQ2	E	630	645	Right-handed alpha
Helix 147	AQ3	E	661	665	Right-handed 310
Helix 148	AQ4	E	685	698	Right-handed alpha
Helix 149	AQ5	E	709	716	Right-handed alpha
Helix 150	AQ6	E	720	738	Right-handed alpha
Helix 151	AQ7	E	746	757	Right-handed alpha
Helix 152	AQ8	E	762	776	Right-handed alpha
Helix 153	AQ9	F	54	61	Right-handed alpha
Helix 154	AR1	F	101	105	Right-handed 310
Helix 155	AR2	F	144	153	Right-handed alpha
Helix 156	AR3	F	233	237	Right-handed 310
Helix 157	AR4	F	243	247	Right-handed 310
Helix 158	AR5	F	250	267	Right-handed alpha
Helix 159	AR6	F	267	275	Right-handed alpha
Helix 160	AR7	F	291	303	Right-handed alpha
Helix 161	AR8	F	319	337	Right-handed alpha
Helix 162	AR9	F	346	351	Right-handed alpha
Helix 163	AS1	F	363	375	Right-handed alpha
Helix 164	AS2	F	415	431	Right-handed alpha
Helix 165	AS3	F	438	448	Right-handed alpha
Helix 166	AS4	F	454	477	Right-handed alpha
Helix 167	AS5	F	487	498	Right-handed alpha
Helix 168	AS6	F	514	519	Right-handed alpha
Helix 169	AS7	F	522	530	Right-handed alpha
Helix 170	AS8	F	532	538	Right-handed alpha
Helix 171	AS9	F	538	546	Right-handed alpha
Helix 172	AT1	F	562	574	Right-handed alpha
Helix 173	AT2	F	583	588	Right-handed alpha
Helix 174	AT3	F	592	608	Right-handed alpha
Helix 175	AT4	F	618	622	Right-handed 310
Helix 176	AT5	F	630	645	Right-handed alpha
Helix 177	AT6	F	661	665	Right-handed 310
Helix 178	AT7	F	685	698	Right-handed alpha
Helix 179	AT8	F	708	716	Right-handed alpha
Helix 180	AT9	F	720	737	Right-handed alpha
Helix 181	AU1	F	746	757	Right-handed alpha
Helix 182	AU2	F	762	776	Right-handed alpha

There are 29 sheets in PDB entry 7WD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	95	97	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	114	117	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	224	226	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	310	first strand
Strand 2	A	340	344	parallel
Strand 3	A	383	389	parallel
Strand 4	A	281	285	parallel
Strand 5	A	407	410	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	581	first strand
Strand 2	A	612	615	parallel
Strand 3	A	654	659	parallel
Strand 4	A	553	556	parallel
Strand 5	A	677	679	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	95	96	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	115	117	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	B	340	345	parallel
Strand 3	B	383	389	parallel
Strand 4	B	281	285	parallel
Strand 5	B	407	410	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	581	first strand
Strand 2	B	612	615	parallel
Strand 3	B	654	659	parallel
Strand 4	B	552	556	parallel
Strand 5	B	677	679	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	95	98	parallel
Strand 3	C	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	69	73	anti-parallel
Strand 3	C	114	117	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	178	182	anti-parallel
Strand 3	C	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	309	first strand
Strand 2	C	340	345	parallel
Strand 3	C	383	389	parallel
Strand 4	C	281	285	parallel
Strand 5	C	407	410	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	577	581	first strand
Strand 2	C	611	615	parallel
Strand 3	C	654	659	parallel
Strand 4	C	553	556	parallel
Strand 5	C	677	679	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	95	97	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	73	first strand
Strand 2	D	114	117	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	310	first strand
Strand 2	D	340	344	parallel
Strand 3	D	383	389	parallel
Strand 4	D	281	285	parallel
Strand 5	D	407	410	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	579	581	first strand
Strand 2	D	612	615	parallel
Strand 3	D	654	659	parallel
Strand 4	D	553	556	parallel
Strand 5	D	677	679	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	37	first strand
Strand 2	E	95	97	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	133	first strand
Strand 2	E	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	310	first strand
Strand 2	E	340	345	parallel
Strand 3	E	383	389	parallel
Strand 4	E	281	285	parallel
Strand 5	E	407	410	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	577	581	first strand
Strand 2	E	611	615	parallel
Strand 3	E	654	659	parallel
Strand 4	E	553	556	parallel
Strand 5	E	677	679	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	37	first strand
Strand 2	F	95	97	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	73	first strand
Strand 2	F	114	117	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	133	first strand
Strand 2	F	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	306	309	first strand
Strand 2	F	339	345	parallel
Strand 3	F	382	389	parallel
Strand 4	F	281	285	parallel
Strand 5	F	407	410	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	577	581	first strand
Strand 2	F	611	615	parallel
Strand 3	F	653	659	parallel
Strand 4	F	553	556	parallel
Strand 5	F	677	679	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WD3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WD3