Analysis of interatomic Contacts of Structural Units in PDB entry:
7WD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WD4 entry

There is 1 chain in PDB entry 7WD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ARG 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7WD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed 310
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
53 64Right-handed alpha
Helix 4
AA4
A
91 100Right-handed alpha
Helix 5
AA5
A
119 135Right-handed alpha
Helix 6
AA6
A
177 183Right-handed alpha
Helix 7
AA7
A
193 207Right-handed alpha
Helix 8
AA8
A
218 223Right-handed alpha
Helix 9
AA9
A
224 227Right-handed 310
Helix 10
AB1
A
238 242Right-handed 310
Helix 11
AB2
A
278 287Right-handed alpha
Helix 12
AB3
A
314 325Right-handed alpha
Helix 13
AB4
A
337 344Right-handed 310
Helix 14
AB5
A
354 367Right-handed alpha
Helix 15
AB6
A
371 381Right-handed alpha
Helix 16
AB7
A
387 392Right-handed 310
Helix 17
AB8
A
395 399Right-handed 310
Helix 18
AB9
A
425 429Right-handed 310
Helix 19
AC1
A
431 443Right-handed alpha
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There are 5 sheets in PDB entry 7WD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
139 143parallel
Strand 3
A
109 113parallel
Strand 4
A
47 51parallel
Strand 5
A
86 90parallel
Strand 6
A
69 71parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
298 302parallel
Strand 3
A
250 253parallel
Strand 4
A
187 190parallel
Strand 5
A
233 236parallel
Strand 6
A
211 214parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
270 276anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
405 406anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
416 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il