Analysis of interatomic Contacts of Structural Units in PDB entry:
7WD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WD8 entry

There are 4 chains in PDB entry 7WD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 318PRO 337
E
 GLN 1ILE 217
F
 ASP 1ARG 215
B
 ALA 522GLY 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7WD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
87 91Right-handed 310
Helix 2
AA2
F
83 87Right-handed 310
Helix 3
AA3
F
125 131Right-handed alpha
Helix 4
AA4
F
187 192Right-handed alpha
Helix 5
AA5
B
525 530Right-handed 310
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There are 12 sheets in PDB entry 7WD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
B
538 543parallel
Strand 3
B
546 554anti-parallel
Strand 4
B
584 588anti-parallel
Strand 5
B
573 577anti-parallel
Strand 6
B
566 567anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 5first strand
Strand 2
E
20 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
114 118parallel
Strand 3
E
93 101anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
45 52anti-parallel
Strand 6
E
57 60anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
114 118parallel
Strand 3
E
93 101anti-parallel
Strand 4
E
105 107anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 131first strand
Strand 2
E
142 152anti-parallel
Strand 3
E
181 191anti-parallel
Strand 4
E
171 172anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 131first strand
Strand 2
E
142 152anti-parallel
Strand 3
E
181 191anti-parallel
Strand 4
E
176 178anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
158 161first strand
Strand 2
E
201 206anti-parallel
Strand 3
E
211 216anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
74 79anti-parallel
Strand 4
F
66 71anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
106 111parallel
Strand 3
F
89 94anti-parallel
Strand 4
F
38 42anti-parallel
Strand 5
F
49 53anti-parallel
Strand 6
F
57 58anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 14first strand
Strand 2
F
106 111parallel
Strand 3
F
89 94anti-parallel
Strand 4
F
101 102anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
118 122first strand
Strand 2
F
133 143anti-parallel
Strand 3
F
177 186anti-parallel
Strand 4
F
163 167anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
149 154first strand
Strand 2
F
196 201anti-parallel
Strand 3
F
209 213anti-parallel
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