Analysis of interatomic Contacts of Structural Units in PDB entry:
7WDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WDA entry

There are 4 chains in PDB entry 7WDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	GLY 463
B	GLN 31	GLY 463
C	GLY 32	GLY 463
D	GLN 31	ILE 64

There are 86 helices in PDB entry 7WDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	56	Right-handed alpha
Helix 2	AA2	A	72	86	Right-handed alpha
Helix 3	AA3	A	100	107	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	120	127	Right-handed alpha
Helix 6	AA6	A	130	136	Right-handed alpha
Helix 7	AA7	A	168	182	Right-handed alpha
Helix 8	AA8	A	195	209	Right-handed alpha
Helix 9	AA9	A	226	245	Right-handed alpha
Helix 10	AB1	A	250	255	Right-handed alpha
Helix 11	AB2	A	260	267	Right-handed alpha
Helix 12	AB3	A	277	289	Right-handed alpha
Helix 13	AB4	A	296	304	Right-handed 310
Helix 14	AB5	A	316	328	Right-handed alpha
Helix 15	AB6	A	362	374	Right-handed alpha
Helix 16	AB7	A	375	385	Right-handed alpha
Helix 17	AB8	A	392	397	Right-handed 310
Helix 18	AB9	A	398	405	Right-handed alpha
Helix 19	AC1	A	407	417	Right-handed alpha
Helix 20	AC2	A	426	439	Right-handed alpha
Helix 21	AC3	A	440	444	Right-handed 310
Helix 22	AC4	A	445	463	Right-handed alpha
Helix 23	AC5	B	43	56	Right-handed alpha
Helix 24	AC6	B	72	86	Right-handed alpha
Helix 25	AC7	B	100	107	Right-handed alpha
Helix 26	AC8	B	112	116	Right-handed 310
Helix 27	AC9	B	120	127	Right-handed alpha
Helix 28	AD1	B	130	136	Right-handed alpha
Helix 29	AD2	B	168	182	Right-handed alpha
Helix 30	AD3	B	195	209	Right-handed alpha
Helix 31	AD4	B	226	245	Right-handed alpha
Helix 32	AD5	B	250	255	Right-handed alpha
Helix 33	AD6	B	260	267	Right-handed alpha
Helix 34	AD7	B	277	289	Right-handed alpha
Helix 35	AD8	B	296	304	Right-handed 310
Helix 36	AD9	B	316	328	Right-handed alpha
Helix 37	AE1	B	362	374	Right-handed alpha
Helix 38	AE2	B	375	385	Right-handed alpha
Helix 39	AE3	B	392	397	Right-handed 310
Helix 40	AE4	B	398	405	Right-handed alpha
Helix 41	AE5	B	407	417	Right-handed alpha
Helix 42	AE6	B	426	439	Right-handed alpha
Helix 43	AE7	B	440	444	Right-handed 310
Helix 44	AE8	B	445	463	Right-handed alpha
Helix 45	AE9	C	43	58	Right-handed alpha
Helix 46	AF1	C	72	86	Right-handed alpha
Helix 47	AF2	C	100	107	Right-handed alpha
Helix 48	AF3	C	112	116	Right-handed 310
Helix 49	AF4	C	120	127	Right-handed alpha
Helix 50	AF5	C	130	136	Right-handed alpha
Helix 51	AF6	C	168	182	Right-handed alpha
Helix 52	AF7	C	195	209	Right-handed alpha
Helix 53	AF8	C	226	245	Right-handed alpha
Helix 54	AF9	C	259	267	Right-handed alpha
Helix 55	AG1	C	277	289	Right-handed alpha
Helix 56	AG2	C	296	304	Right-handed 310
Helix 57	AG3	C	316	328	Right-handed alpha
Helix 58	AG4	C	362	374	Right-handed alpha
Helix 59	AG5	C	375	385	Right-handed alpha
Helix 60	AG6	C	392	397	Right-handed 310
Helix 61	AG7	C	398	405	Right-handed alpha
Helix 62	AG8	C	407	417	Right-handed alpha
Helix 63	AG9	C	426	439	Right-handed alpha
Helix 64	AH1	C	440	444	Right-handed 310
Helix 65	AH2	C	445	463	Right-handed alpha
Helix 66	AH3	D	43	56	Right-handed alpha
Helix 67	AH4	D	72	86	Right-handed alpha
Helix 68	AH5	D	100	107	Right-handed alpha
Helix 69	AH6	D	112	116	Right-handed 310
Helix 70	AH7	D	120	127	Right-handed alpha
Helix 71	AH8	D	130	136	Right-handed alpha
Helix 72	AH9	D	168	182	Right-handed alpha
Helix 73	AI1	D	195	209	Right-handed alpha
Helix 74	AI2	D	226	245	Right-handed alpha
Helix 75	AI3	D	260	267	Right-handed alpha
Helix 76	AI4	D	277	289	Right-handed alpha
Helix 77	AI5	D	296	304	Right-handed 310
Helix 78	AI6	D	316	328	Right-handed alpha
Helix 79	AI7	D	362	374	Right-handed alpha
Helix 80	AI8	D	375	385	Right-handed alpha
Helix 81	AI9	D	392	397	Right-handed 310
Helix 82	AJ1	D	398	405	Right-handed alpha
Helix 83	AJ2	D	407	417	Right-handed alpha
Helix 84	AJ3	D	426	439	Right-handed alpha
Helix 85	AJ4	D	440	444	Right-handed 310
Helix 86	AJ5	D	445	462	Right-handed alpha

There are 13 sheets in PDB entry 7WDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	69	first strand
Strand 2	A	33	40	parallel
Strand 3	A	93	97	parallel
Strand 4	A	350	356	anti-parallel
Strand 5	A	146	151	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	142	143	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	189	first strand
Strand 2	A	270	275	parallel
Strand 3	A	154	157	anti-parallel
Strand 4	A	332	334	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	418	419	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	69	first strand
Strand 2	B	33	40	parallel
Strand 3	B	93	97	parallel
Strand 4	B	350	356	anti-parallel
Strand 5	B	146	151	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	142	143	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	270	275	parallel
Strand 3	B	154	157	anti-parallel
Strand 4	B	332	334	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	69	first strand
Strand 2	C	33	40	parallel
Strand 3	C	93	97	parallel
Strand 4	C	350	356	anti-parallel
Strand 5	C	146	151	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	142	143	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	189	first strand
Strand 2	C	270	275	parallel
Strand 3	C	154	157	anti-parallel
Strand 4	C	332	334	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	69	first strand
Strand 2	D	33	40	parallel
Strand 3	D	93	97	parallel
Strand 4	D	350	356	anti-parallel
Strand 5	D	146	151	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	142	143	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	189	first strand
Strand 2	D	270	275	parallel
Strand 3	D	154	157	anti-parallel
Strand 4	D	332	334	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WDA