Analysis of interatomic Contacts of Structural Units in PDB entry:
7WDK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WDK entry

There are 2 chains in PDB entry 7WDK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 28	ILE 1072
B	TYR 26	ARG 373

There are 34 helices in PDB entry 7WDK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	71	Right-handed alpha
Helix 2	AA2	A	93	105	Right-handed alpha
Helix 3	AA3	A	128	137	Right-handed alpha
Helix 4	AA4	A	160	164	Right-handed 310
Helix 5	AA5	A	203	207	Right-handed 310
Helix 6	AA6	A	225	238	Right-handed alpha
Helix 7	AA7	A	418	429	Right-handed alpha
Helix 8	AA8	A	438	443	Right-handed alpha
Helix 9	AA9	A	475	496	Right-handed alpha
Helix 10	AB1	A	500	521	Right-handed alpha
Helix 11	AB2	A	575	590	Right-handed alpha
Helix 12	AB3	A	607	619	Right-handed alpha
Helix 13	AB4	A	647	655	Right-handed alpha
Helix 14	AB5	A	660	668	Right-handed alpha
Helix 15	AB6	A	669	676	Right-handed alpha
Helix 16	AB7	A	682	692	Right-handed alpha
Helix 17	AB8	A	694	712	Right-handed alpha
Helix 18	AB9	A	730	746	Right-handed alpha
Helix 19	AC1	A	765	780	Right-handed alpha
Helix 20	AC2	A	785	799	Right-handed alpha
Helix 21	AC3	A	804	812	Right-handed alpha
Helix 22	AC4	A	821	826	Right-handed 310
Helix 23	AC5	A	874	879	Right-handed alpha
Helix 24	AC6	A	910	924	Right-handed alpha
Helix 25	AC7	A	937	941	Right-handed 310
Helix 26	AC8	A	942	946	Right-handed 310
Helix 27	AC9	A	949	971	Right-handed alpha
Helix 28	AD1	A	988	992	Right-handed 310
Helix 29	AD2	B	47	54	Right-handed 310
Helix 30	AD3	B	89	126	Right-handed alpha
Helix 31	AD4	B	134	148	Right-handed alpha
Helix 32	AD5	B	149	153	Right-handed 310
Helix 33	AD6	B	195	206	Right-handed alpha
Helix 34	AD7	B	355	368	Right-handed alpha

There are 12 sheets in PDB entry 7WDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	469	473	anti-parallel
Strand 3	A	177	181	anti-parallel
Strand 4	A	170	173	anti-parallel
Strand 5	A	74	79	anti-parallel
Strand 6	A	109	114	parallel
Strand 7	A	146	148	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	884	892	parallel
Strand 3	A	865	868	anti-parallel
Strand 4	A	858	861	anti-parallel
Strand 5	A	622	626	anti-parallel
Strand 6	A	750	754	parallel
Strand 7	A	833	843	parallel
Strand 8	A	846	851	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	566	574	anti-parallel
Strand 3	A	884	892	anti-parallel
Strand 4	A	865	868	anti-parallel
Strand 5	A	858	861	anti-parallel
Strand 6	A	622	626	anti-parallel
Strand 7	A	750	754	parallel
Strand 8	A	833	843	parallel
Strand 9	A	1051	1053	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	853	854	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	896	898	first strand
Strand 2	A	906	908	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1005	1007	first strand
Strand 2	A	1017	1019	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	30	first strand
Strand 2	B	33	36	anti-parallel
Strand 3	B	371	372	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	236	244	anti-parallel
Strand 3	B	73	75	anti-parallel
Strand 4	B	80	84	anti-parallel
Strand 5	B	185	189	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	236	244	anti-parallel
Strand 3	B	250	257	anti-parallel
Strand 4	B	334	341	anti-parallel
Strand 5	B	320	325	anti-parallel
Strand 6	B	304	310	anti-parallel
Strand 7	B	285	291	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	166	168	anti-parallel
Strand 3	B	173	174	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	226	229	anti-parallel
Strand 3	B	220	223	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	299	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WDK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WDK