Analysis of interatomic Contacts of Structural Units in PDB entry:
7WDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WDN entry

There is 1 chain in PDB entry 7WDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6LEU 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7WDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 26Right-handed alpha
Helix 2
AA2
A
30 34Right-handed 310
Helix 3
AA3
A
37 43Right-handed alpha
Helix 4
AA4
A
60 76Right-handed alpha
Helix 5
AA5
A
85 90Right-handed alpha
Helix 6
AA6
A
98 115Right-handed alpha
Helix 7
AA7
A
129 136Right-handed alpha
Helix 8
AA8
A
142 159Right-handed alpha
Helix 9
AA9
A
170 180Right-handed alpha
Helix 10
AB1
A
190 215Right-handed alpha
Helix 11
AB2
A
237 252Right-handed alpha
Helix 12
AB3
A
252 262Right-handed alpha
Helix 13
AB4
A
265 273Right-handed alpha
Helix 14
AB5
A
274 277Right-handed 310
Helix 15
AB6
A
282 288Right-handed alpha
Helix 16
AB7
A
333 348Right-handed alpha
Helix 17
AB8
A
373 393Right-handed alpha
Helix 18
AB9
A
410 417Right-handed 310
Helix 19
AC1
A
434 447Right-handed alpha
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There are 3 sheets in PDB entry 7WDN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
79 83parallel
Strand 3
A
118 124parallel
Strand 4
A
164 169parallel
Strand 5
A
221 227parallel
Strand 6
A
294 297parallel
Strand 7
A
352 357parallel
Strand 8
A
397 403parallel
Strand 9
A
15 19parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
301 306parallel
Strand 3
A
315 318anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
431 433anti-parallel
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