Analysis of interatomic Contacts of Structural Units in PDB entry:
7WDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WDT entry

There is 1 chain in PDB entry 7WDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 46HIS 867
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7WDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 54Right-handed 310
Helix 2
AA2
A
68 73Right-handed 310
Helix 3
AA3
A
84 89Right-handed alpha
Helix 4
AA4
A
234 236Right-handed 310
Helix 5
AA5
A
237 253Right-handed alpha
Helix 6
AA6
A
274 278Right-handed 310
Helix 7
AA7
A
285 288Right-handed 310
Helix 8
AA8
A
305 321Right-handed alpha
Helix 9
AA9
A
362 376Right-handed alpha
Helix 10
AB1
A
409 416Right-handed alpha
Helix 11
AB2
A
421 425Right-handed 310
Helix 12
AB3
A
440 454Right-handed alpha
Helix 13
AB4
A
468 475Right-handed alpha
Helix 14
AB5
A
476 479Right-handed 310
Helix 15
AB6
A
497 501Right-handed 310
Helix 16
AB7
A
510 536Right-handed alpha
Helix 17
AB8
A
538 543Right-handed alpha
Helix 18
AB9
A
562 581Right-handed alpha
Helix 19
AC1
A
590 595Right-handed 310
Helix 20
AC2
A
610 613Right-handed 310
Helix 21
AC3
A
614 624Right-handed alpha
Helix 22
AC4
A
632 637Right-handed alpha
Helix 23
AC5
A
657 663Right-handed alpha
Helix 24
AC6
A
665 670Right-handed alpha
Helix 25
AC7
A
673 675Right-handed 310
Helix 26
AC8
A
691 700Right-handed alpha
Helix 27
AC9
A
701 712Right-handed alpha
Helix 28
AD1
A
713 717Right-handed 310
Helix 29
AD2
A
718 737Right-handed alpha
Helix 30
AD3
A
757 761Right-handed 310
Helix 31
AD4
A
838 843Right-handed alpha
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There are 8 sheets in PDB entry 7WDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
186 197anti-parallel
Strand 3
A
105 124anti-parallel
Strand 4
A
96 97first strand
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
105 124anti-parallel
Strand 3
A
186 197anti-parallel
Strand 4
A
157 179first strand
Strand 5
A
129 137anti-parallel
Strand 6
A
144 150anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
339 343anti-parallel
Strand 3
A
290 295anti-parallel
Strand 4
A
298 303anti-parallel
Strand 5
A
264 268parallel
Strand 6
A
230 232parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
335 336anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 354first strand
Strand 2
A
380 386parallel
Strand 3
A
457 464parallel
Strand 4
A
546 550parallel
Strand 5
A
584 588parallel
Strand 6
A
603 606parallel
Strand 7
A
627 630parallel
Strand 8
A
677 684parallel
Strand 9
A
349 354parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 755first strand
Strand 2
A
767 774anti-parallel
Strand 3
A
831 836anti-parallel
Strand 4
A
802 805anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
785 792anti-parallel
Strand 3
A
850 858anti-parallel
Strand 4
A
861 867anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
815 816first strand
Strand 2
A
819 820anti-parallel
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