Analysis of interatomic Contacts of Structural Units in PDB entry:
7WFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WFX entry

There are 2 chains in PDB entry 7WFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -3ILE 503
B
 ALA 0PHE 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 7WFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed alpha
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
38 45Right-handed alpha
Helix 4
AA4
A
48 50Right-handed 310
Helix 5
AA5
A
67 76Right-handed alpha
Helix 6
AA6
A
111 126Right-handed alpha
Helix 7
AA7
A
138 147Right-handed alpha
Helix 8
AA8
A
148 150Right-handed 310
Helix 9
AA9
A
163 177Right-handed alpha
Helix 10
AB1
A
184 193Right-handed alpha
Helix 11
AB2
A
198 203Right-handed alpha
Helix 12
AB3
A
205 214Right-handed alpha
Helix 13
AB4
A
215 218Right-handed 310
Helix 14
AB5
A
262 267Right-handed 310
Helix 15
AB6
A
268 284Right-handed alpha
Helix 16
AB7
A
298 303Right-handed alpha
Helix 17
AB8
A
304 308Right-handed 310
Helix 18
AB9
A
322 326Right-handed alpha
Helix 19
AC1
A
327 329Right-handed 310
Helix 20
AC2
A
367 373Right-handed alpha
Helix 21
AC3
A
377 392Right-handed alpha
Helix 22
AC4
A
437 447Right-handed alpha
Helix 23
AC5
A
448 454Right-handed 310
Helix 24
AC6
A
472 476Right-handed 310
Helix 25
AC7
A
477 492Right-handed alpha
Helix 26
AC8
A
492 497Right-handed alpha
Helix 27
AC9
B
2 6Right-handed 310
Helix 28
AD1
B
19 23Right-handed alpha
Helix 29
AD2
B
31 36Right-handed 310
Helix 30
AD3
B
38 45Right-handed alpha
Helix 31
AD4
B
48 52Right-handed 310
Helix 32
AD5
B
67 76Right-handed alpha
Helix 33
AD6
B
111 126Right-handed alpha
Helix 34
AD7
B
138 147Right-handed alpha
Helix 35
AD8
B
148 150Right-handed 310
Helix 36
AD9
B
163 177Right-handed alpha
Helix 37
AE1
B
184 193Right-handed alpha
Helix 38
AE2
B
198 204Right-handed alpha
Helix 39
AE3
B
205 214Right-handed alpha
Helix 40
AE4
B
215 218Right-handed 310
Helix 41
AE5
B
262 267Right-handed 310
Helix 42
AE6
B
268 284Right-handed alpha
Helix 43
AE7
B
298 303Right-handed alpha
Helix 44
AE8
B
304 308Right-handed 310
Helix 45
AE9
B
322 326Right-handed alpha
Helix 46
AF1
B
327 329Right-handed 310
Helix 47
AF2
B
367 373Right-handed alpha
Helix 48
AF3
B
377 391Right-handed alpha
Helix 49
AF4
B
437 447Right-handed alpha
Helix 50
AF5
B
448 454Right-handed 310
Helix 51
AF6
B
472 476Right-handed 310
Helix 52
AF7
B
477 492Right-handed alpha
Helix 53
AF8
B
492 497Right-handed alpha
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There are 9 sheets in PDB entry 7WFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
55 65anti-parallel
Strand 3
A
85 89anti-parallel
Strand 4
A
80 82anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
55 65anti-parallel
Strand 3
A
7 10anti-parallel
Strand 4
A
499 503parallel
Strand 5
A
458 461parallel
Strand 6
A
466 469anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
406 407anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
228 236anti-parallel
Strand 3
A
239 249anti-parallel
Strand 4
A
252 260anti-parallel
Strand 5
A
288 294parallel
Strand 6
A
99 103anti-parallel
Strand 7
A
310 313anti-parallel
Strand 8
A
318 321anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
364 366anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
55 65anti-parallel
Strand 3
B
85 89anti-parallel
Strand 4
B
80 82anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
55 65anti-parallel
Strand 3
B
7 10anti-parallel
Strand 4
B
499 503parallel
Strand 5
B
458 461parallel
Strand 6
B
466 469anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
228 236anti-parallel
Strand 3
B
239 249anti-parallel
Strand 4
B
252 260anti-parallel
Strand 5
B
288 294parallel
Strand 6
B
99 103anti-parallel
Strand 7
B
310 313anti-parallel
Strand 8
B
318 321anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
364 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il