Analysis of interatomic Contacts of Structural Units in PDB entry:
7WGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WGD entry

There are 3 chains in PDB entry 7WGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 25	GLN 601
L	GLU 1	GLU 214
H	GLU 1	ARG 219

There are 45 helices in PDB entry 7WGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	45	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	52	60	Right-handed alpha
Helix 4	AA4	A	61	64	Right-handed 310
Helix 5	AA5	A	65	76	Right-handed alpha
Helix 6	AA6	A	76	92	Right-handed alpha
Helix 7	AA7	A	94	103	Right-handed alpha
Helix 8	AA8	A	104	106	Right-handed 310
Helix 9	AA9	A	107	121	Right-handed alpha
Helix 10	AB1	A	125	137	Right-handed alpha
Helix 11	AB2	A	143	147	Right-handed 310
Helix 12	AB3	A	210	219	Right-handed alpha
Helix 13	AB4	A	222	226	Right-handed 310
Helix 14	AB5	A	236	252	Right-handed alpha
Helix 15	AB6	A	257	269	Right-handed alpha
Helix 16	AB7	A	270	284	Right-handed alpha
Helix 17	AB8	A	288	298	Right-handed alpha
Helix 18	AB9	A	302	305	Right-handed 310
Helix 19	AC1	A	306	322	Right-handed alpha
Helix 20	AC2	A	326	334	Right-handed alpha
Helix 21	AC3	A	340	374	Right-handed alpha
Helix 22	AC4	A	377	381	Right-handed 310
Helix 23	AC5	A	385	391	Right-handed alpha
Helix 24	AC6	A	391	398	Right-handed alpha
Helix 25	AC7	A	402	435	Right-handed alpha
Helix 26	AC8	A	437	442	Right-handed alpha
Helix 27	AC9	A	443	459	Right-handed alpha
Helix 28	AD1	A	460	464	Right-handed 310
Helix 29	AD2	A	466	476	Right-handed alpha
Helix 30	AD3	A	479	496	Right-handed alpha
Helix 31	AD4	A	499	512	Right-handed alpha
Helix 32	AD5	A	516	525	Right-handed alpha
Helix 33	AD6	A	525	541	Right-handed alpha
Helix 34	AD7	A	553	569	Right-handed alpha
Helix 35	AD8	A	569	580	Right-handed alpha
Helix 36	AD9	A	586	594	Right-handed alpha
Helix 37	AE1	L	30	32	Right-handed 310
Helix 38	AE2	L	80	84	Right-handed 310
Helix 39	AE3	L	122	128	Right-handed alpha
Helix 40	AE4	L	183	188	Right-handed alpha
Helix 41	AE5	H	28	32	Right-handed 310
Helix 42	AE6	H	87	91	Right-handed 310
Helix 43	AE7	H	101	105	Right-handed 310
Helix 44	AE8	H	162	164	Right-handed 310
Helix 45	AE9	H	206	209	Right-handed 310

There are 11 sheets in PDB entry 7WGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	547	first strand
Strand 2	A	550	551	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	63	76	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	160	164	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	206	211	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	142	151	anti-parallel
Strand 3	H	181	189	anti-parallel
Strand 4	H	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	142	151	anti-parallel
Strand 3	H	181	189	anti-parallel
Strand 4	H	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	216	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WGD