Analysis of interatomic Contacts of Structural Units in PDB entry:
7WHF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WHF entry

There are 6 chains in PDB entry 7WHF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 72
A	GLY 74	PHE 375
G	MET 1	GLN 226
B	THR 5	GLU 72
B	GLY 74	PHE 375
C	MET 1	LYS 225

There are 55 helices in PDB entry 7WHF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	58	Right-handed 310
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	196	Right-handed alpha
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	260	Right-handed alpha
Helix 11	AB2	A	261	262	Right-handed 310
Helix 12	AB3	A	263	268	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	285	288	Right-handed 310
Helix 15	AB6	A	289	295	Right-handed alpha
Helix 16	AB7	A	301	306	Right-handed 310
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	334	336	Right-handed 310
Helix 19	AC1	A	337	347	Right-handed alpha
Helix 20	AC2	A	349	354	Right-handed alpha
Helix 21	AC3	A	359	366	Right-handed alpha
Helix 22	AC4	A	368	374	Right-handed alpha
Helix 23	AC5	G	41	45	Right-handed 310
Helix 24	AC6	G	57	75	Right-handed alpha
Helix 25	AC7	G	89	96	Right-handed alpha
Helix 26	AC8	G	148	152	Right-handed 310
Helix 27	AC9	G	175	193	Right-handed alpha
Helix 28	AD1	G	210	222	Right-handed alpha
Helix 29	AD2	B	55	60	Right-handed alpha
Helix 30	AD3	B	78	92	Right-handed alpha
Helix 31	AD4	B	97	101	Right-handed 310
Helix 32	AD5	B	112	126	Right-handed alpha
Helix 33	AD6	B	137	145	Right-handed alpha
Helix 34	AD7	B	172	175	Right-handed 310
Helix 35	AD8	B	181	196	Right-handed alpha
Helix 36	AD9	B	202	217	Right-handed alpha
Helix 37	AE1	B	222	233	Right-handed alpha
Helix 38	AE2	B	252	260	Right-handed alpha
Helix 39	AE3	B	261	262	Right-handed 310
Helix 40	AE4	B	263	268	Right-handed 310
Helix 41	AE5	B	273	284	Right-handed alpha
Helix 42	AE6	B	289	295	Right-handed alpha
Helix 43	AE7	B	301	305	Right-handed 310
Helix 44	AE8	B	308	321	Right-handed alpha
Helix 45	AE9	B	334	336	Right-handed 310
Helix 46	AF1	B	337	347	Right-handed alpha
Helix 47	AF2	B	349	354	Right-handed alpha
Helix 48	AF3	B	359	366	Right-handed alpha
Helix 49	AF4	B	368	374	Right-handed alpha
Helix 50	AF5	C	41	45	Right-handed 310
Helix 51	AF6	C	57	75	Right-handed alpha
Helix 52	AF7	C	89	96	Right-handed alpha
Helix 53	AF8	C	148	152	Right-handed 310
Helix 54	AF9	C	175	193	Right-handed alpha
Helix 55	AG1	C	210	222	Right-handed alpha

There are 17 sheets in PDB entry 7WHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	66	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	15	first strand
Strand 2	G	3	8	anti-parallel
Strand 3	G	26	31	anti-parallel
Strand 4	G	47	52	anti-parallel
Strand 5	G	79	84	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	22	first strand
Strand 2	G	98	101	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	145	first strand
Strand 2	G	122	128	anti-parallel
Strand 3	G	157	161	anti-parallel
Strand 4	G	165	170	anti-parallel
Strand 5	G	198	203	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	15	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	26	31	anti-parallel
Strand 4	C	47	52	anti-parallel
Strand 5	C	79	84	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	22	first strand
Strand 2	C	98	101	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	145	first strand
Strand 2	C	122	128	anti-parallel
Strand 3	C	157	162	anti-parallel
Strand 4	C	165	170	anti-parallel
Strand 5	C	198	203	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WHF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WHF