Analysis of interatomic Contacts of Structural Units in PDB entry:
7WHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WHM entry

There is 1 chain in PDB entry 7WHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26ILE 1239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7WHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 53Right-handed alpha
Helix 2
AA2
A
58 74Right-handed alpha
Helix 3
AA3
A
86 97Right-handed alpha
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
241 249Right-handed alpha
Helix 6
AA6
A
275 277Right-handed 310
Helix 7
AA7
A
306 338Right-handed alpha
Helix 8
AA8
A
349 372Right-handed alpha
Helix 9
AA9
A
627 631Right-handed 310
Helix 10
AB1
A
651 658Right-handed alpha
Helix 11
AB2
A
681 688Right-handed alpha
Helix 12
AB3
A
718 724Right-handed alpha
Helix 13
AB4
A
744 754Right-handed alpha
Helix 14
AB5
A
756 769Right-handed alpha
Helix 15
AB6
A
773 777Right-handed 310
Helix 16
AB7
A
778 796Right-handed alpha
Helix 17
AB8
A
800 814Right-handed alpha
Helix 18
AB9
A
820 835Right-handed alpha
Helix 19
AC1
A
835 850Right-handed alpha
Helix 20
AC2
A
852 861Right-handed alpha
Helix 21
AC3
A
867 885Right-handed alpha
Helix 22
AC4
A
887 892Right-handed 310
Helix 23
AC5
A
897 901Right-handed 310
Helix 24
AC6
A
904 909Right-handed alpha
Helix 25
AC7
A
909 923Right-handed alpha
Helix 26
AC8
A
924 928Right-handed 310
Helix 27
AC9
A
932 937Right-handed alpha
Helix 28
AD1
A
979 994Right-handed alpha
Helix 29
AD2
A
1074 1087Right-handed alpha
Helix 30
AD3
A
1094 1105Right-handed alpha
Helix 31
AD4
A
1123 1136Right-handed alpha
Helix 32
AD5
A
1141 1146Right-handed alpha
Helix 33
AD6
A
1148 1161Right-handed alpha
Helix 34
AD7
A
1170 1193Right-handed alpha
Helix 35
AD8
A
1203 1220Right-handed alpha
Helix 36
AD9
A
1222 1236Right-handed alpha
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There are 11 sheets in PDB entry 7WHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
289 297anti-parallel
Strand 3
A
105 112anti-parallel
Strand 4
A
186 196anti-parallel
Strand 5
A
227 239anti-parallel
Strand 6
A
255 264anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
289 297anti-parallel
Strand 3
A
1108 1109anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 181first strand
Strand 2
A
155 165anti-parallel
Strand 3
A
139 150anti-parallel
Strand 4
A
124 130anti-parallel
Strand 5
A
279 284anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
211 214anti-parallel
Strand 3
A
1043 1056parallel
Strand 4
A
1061 1065anti-parallel
Strand 5
A
300 301parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
211 214anti-parallel
Strand 3
A
1043 1056parallel
Strand 4
A
1016 1027anti-parallel
Strand 5
A
1001 1013anti-parallel
Strand 6
A
957 958anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 395first strand
Strand 2
A
725 739anti-parallel
Strand 3
A
558 570anti-parallel
Strand 4
A
573 579anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
435 440anti-parallel
Strand 3
A
673 679parallel
Strand 4
A
661 667anti-parallel
Strand 5
A
646 650anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 458first strand
Strand 2
A
462 472anti-parallel
Strand 3
A
540 550anti-parallel
Strand 4
A
593 606anti-parallel
Strand 5
A
583 589anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 502first strand
Strand 2
A
510 516anti-parallel
Strand 3
A
634 639anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 531first strand
Strand 2
A
622 624anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
864 865first strand
Strand 2
A
1118 1119parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il