Analysis of interatomic Contacts of Structural Units in PDB entry:
7WJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WJD entry

There is 1 chain in PDB entry 7WJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 11LYS 739
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 7WJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 186Right-handed alpha
Helix 2
AA2
A
192 196Right-handed 310
Helix 3
AA3
A
207 221Right-handed alpha
Helix 4
AA4
A
231 235Right-handed 310
Helix 5
AA5
A
241 245Right-handed 310
Helix 6
AA6
A
260 271Right-handed alpha
Helix 7
AA7
A
280 284Right-handed 310
Helix 8
AA8
A
291 299Right-handed alpha
Helix 9
AA9
A
302 306Right-handed 310
Helix 10
AB1
A
315 326Right-handed alpha
Helix 11
AB2
A
326 334Right-handed alpha
Helix 12
AB3
A
353 367Right-handed alpha
Helix 13
AB4
A
383 387Right-handed 310
Helix 14
AB5
A
398 412Right-handed alpha
Helix 15
AB6
A
413 416Right-handed 310
Helix 16
AB7
A
433 446Right-handed alpha
Helix 17
AB8
A
463 467Right-handed 310
Helix 18
AB9
A
468 485Right-handed alpha
Helix 19
AC1
A
485 500Right-handed alpha
Helix 20
AC2
A
507 511Right-handed alpha
Helix 21
AC3
A
514 519Right-handed 310
Helix 22
AC4
A
680 692Right-handed alpha
Helix 23
AC5
A
695 709Right-handed alpha
Helix 24
AC6
A
711 721Right-handed alpha
Helix 25
AC7
A
724 738Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 7WJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
29 34anti-parallel
Strand 4
A
163 168anti-parallel
Strand 5
A
140 143anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
74 78anti-parallel
Strand 4
A
88 92anti-parallel
Strand 5
A
102 104anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
274 279parallel
Strand 3
A
227 230parallel
Strand 4
A
198 200parallel
Strand 5
A
450 452parallel
Strand 6
A
423 424parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
420 421parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
A
524 526anti-parallel
Strand 3
A
530 532anti-parallel
Strand 4
A
583 586anti-parallel
Strand 5
A
556 559anti-parallel
Strand 6
A
565 567anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 552first strand
Strand 2
A
570 576anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 594first strand
Strand 2
A
606 611anti-parallel
Strand 3
A
648 653parallel
Strand 4
A
656 663anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 623first strand
Strand 2
A
626 633anti-parallel
Strand 3
A
636 641anti-parallel
Strand 4
A
666 669anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il