Analysis of interatomic Contacts of Structural Units in PDB entry:
7WKD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WKD entry

There are 6 chains in PDB entry 7WKD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	VAL 361
B	GLU 8	ASN 345
E	VAL 1	LEU 247
G	THR 5	ASN 58
R	VAL 26	ASN 336
C	HIS 2	HIS 2

There are 28 helices in PDB entry 7WKD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	212	216	Right-handed 310
Helix 4	AA4	A	232	245	Right-handed alpha
Helix 5	AA5	A	248	252	Right-handed 310
Helix 6	AA6	A	260	271	Right-handed alpha
Helix 7	AA7	A	274	278	Right-handed 310
Helix 8	AA8	A	279	284	Right-handed 310
Helix 9	AA9	A	298	318	Right-handed alpha
Helix 10	AB1	A	338	358	Right-handed alpha
Helix 11	AB2	B	9	30	Right-handed alpha
Helix 12	AB3	B	34	39	Right-handed alpha
Helix 13	AB4	E	52	55	Right-handed 310
Helix 14	AB5	E	86	90	Right-handed 310
Helix 15	AB6	G	6	23	Right-handed alpha
Helix 16	AB7	G	28	43	Right-handed alpha
Helix 17	AB8	R	27	52	Right-handed alpha
Helix 18	AB9	R	58	89	Right-handed alpha
Helix 19	AC1	R	93	129	Right-handed alpha
Helix 20	AC2	R	129	137	Right-handed alpha
Helix 21	AC3	R	138	158	Right-handed alpha
Helix 22	AC4	R	158	163	Right-handed alpha
Helix 23	AC5	R	184	187	Right-handed 310
Helix 24	AC6	R	188	198	Right-handed alpha
Helix 25	AC7	R	200	220	Right-handed alpha
Helix 26	AC8	R	263	290	Right-handed alpha
Helix 27	AC9	R	298	320	Right-handed alpha
Helix 28	AD1	R	324	335	Right-handed alpha

There are 14 sheets in PDB entry 7WKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	220	224	parallel
Strand 5	A	254	257	parallel
Strand 6	A	326	329	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	341	345	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	139	145	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	180	184	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	254	259	anti-parallel
Strand 4	B	264	270	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	298	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	114	118	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	32	38	anti-parallel
Strand 5	E	44	50	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	114	118	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	109	110	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	207	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	243	246	parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	186	189	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	165	166	first strand
Strand 2	R	179	180	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WKD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WKD