Analysis of interatomic Contacts of Structural Units in PDB entry:
7WKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WKO entry

There are 2 chains in PDB entry 7WKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 174
B
 MET 1ASP 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7WKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
22 25Right-handed 310
Helix 3
AA3
A
34 38Right-handed 310
Helix 4
AA4
A
48 52Right-handed 310
Helix 5
AA5
A
61 67Right-handed alpha
Helix 6
AA6
A
70 78Right-handed alpha
Helix 7
AA7
A
121 134Right-handed alpha
Helix 8
AA8
A
148 152Right-handed 310
Helix 9
AA9
A
153 159Right-handed alpha
Helix 10
AB1
B
28 44Right-handed alpha
Helix 11
AB2
B
110 122Right-handed alpha
Helix 12
AB3
B
144 154Right-handed alpha
Helix 13
AB4
B
169 178Right-handed alpha
Helix 14
AB5
B
221 223Right-handed 310
Helix 15
AB6
B
225 229Right-handed 310
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There are 6 sheets in PDB entry 7WKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
45 47anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
19 20anti-parallel
Strand 3
A
119 120anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
112 117anti-parallel
Strand 3
B
205 219parallel
Strand 4
B
159 163anti-parallel
Strand 5
B
46 59anti-parallel
Strand 6
B
93 105anti-parallel
Strand 7
B
3 16anti-parallel
Strand 8
B
138 141anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
129 133anti-parallel
Strand 3
B
3 16anti-parallel
Strand 4
B
93 105anti-parallel
Strand 5
B
46 59anti-parallel
Strand 6
B
159 163anti-parallel
Strand 7
B
205 219anti-parallel
Strand 8
B
180 191anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
163 168anti-parallel
Strand 3
B
23 25parallel
Strand 4
B
18 20anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
238 241anti-parallel
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