Analysis of interatomic Contacts of Structural Units in PDB entry:
7WKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WKQ entry

There are 4 chains in PDB entry 7WKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6TRP 248
B
 LYS 7TYR 244
C
 ALA 6ALA 243
D
 LYS 7ALA 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 7WKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
65 80Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
102 114Right-handed alpha
Helix 6
AA6
A
114 132Right-handed alpha
Helix 7
AA7
A
151 174Right-handed alpha
Helix 8
AA8
A
189 197Right-handed 310
Helix 9
AA9
A
200 211Right-handed alpha
Helix 10
AB1
A
218 227Right-handed alpha
Helix 11
AB2
A
228 230Right-handed 310
Helix 12
AB3
B
18 30Right-handed alpha
Helix 13
AB4
B
43 50Right-handed alpha
Helix 14
AB5
B
65 80Right-handed alpha
Helix 15
AB6
B
97 101Right-handed 310
Helix 16
AB7
B
102 114Right-handed alpha
Helix 17
AB8
B
114 132Right-handed alpha
Helix 18
AB9
B
151 173Right-handed alpha
Helix 19
AC1
B
218 227Right-handed alpha
Helix 20
AC2
B
228 230Right-handed 310
Helix 21
AC3
C
19 30Right-handed alpha
Helix 22
AC4
C
40 50Right-handed alpha
Helix 23
AC5
C
65 81Right-handed alpha
Helix 24
AC6
C
97 101Right-handed 310
Helix 25
AC7
C
102 114Right-handed alpha
Helix 26
AC8
C
114 132Right-handed alpha
Helix 27
AC9
C
152 173Right-handed alpha
Helix 28
AD1
C
218 227Right-handed alpha
Helix 29
AD2
C
228 230Right-handed 310
Helix 30
AD3
D
18 30Right-handed alpha
Helix 31
AD4
D
42 50Right-handed alpha
Helix 32
AD5
D
65 81Right-handed alpha
Helix 33
AD6
D
97 101Right-handed 310
Helix 34
AD7
D
102 114Right-handed alpha
Helix 35
AD8
D
114 132Right-handed alpha
Helix 36
AD9
D
151 172Right-handed alpha
Helix 37
AE1
D
189 194Right-handed 310
Helix 38
AE2
D
200 211Right-handed alpha
Helix 39
AE3
D
218 227Right-handed alpha
Helix 40
AE4
D
227 232Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7WKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
32 37parallel
Strand 3
A
8 12parallel
Strand 4
A
85 90parallel
Strand 5
A
134 140parallel
Strand 6
A
177 183parallel
Strand 7
A
240 242parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
32 37parallel
Strand 3
B
8 12parallel
Strand 4
B
85 90parallel
Strand 5
B
134 140parallel
Strand 6
B
177 183parallel
Strand 7
B
241 243parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 57first strand
Strand 2
C
32 37parallel
Strand 3
C
8 12parallel
Strand 4
C
85 89parallel
Strand 5
C
134 139parallel
Strand 6
C
177 182parallel
Strand 7
C
241 242parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 57first strand
Strand 2
D
32 37parallel
Strand 3
D
8 12parallel
Strand 4
D
85 90parallel
Strand 5
D
134 140parallel
Strand 6
D
177 182parallel
Strand 7
D
241 242parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il