Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WM1 entry

There are 4 chains in PDB entry 7WM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 44	LEU 492
B	SER 54	TYR 526
C	LYS 44	LEU 492
D	SER 54	TYR 526

There are 82 helices in PDB entry 7WM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	64	Right-handed alpha
Helix 2	AA2	A	67	81	Right-handed alpha
Helix 3	AA3	A	86	107	Right-handed alpha
Helix 4	AA4	A	123	132	Right-handed alpha
Helix 5	AA5	A	137	142	Right-handed alpha
Helix 6	AA6	A	145	153	Right-handed alpha
Helix 7	AA7	A	156	161	Right-handed alpha
Helix 8	AA8	A	162	167	Right-handed 310
Helix 9	AA9	A	168	181	Right-handed alpha
Helix 10	AB1	A	186	215	Right-handed alpha
Helix 11	AB2	A	235	252	Right-handed alpha
Helix 12	AB3	A	263	290	Right-handed alpha
Helix 13	AB4	A	296	301	Right-handed alpha
Helix 14	AB5	A	302	307	Right-handed alpha
Helix 15	AB6	A	307	316	Right-handed alpha
Helix 16	AB7	A	322	339	Right-handed alpha
Helix 17	AB8	A	346	350	Right-handed 310
Helix 18	AB9	A	354	369	Right-handed alpha
Helix 19	AC1	A	379	387	Right-handed alpha
Helix 20	AC2	A	440	445	Right-handed alpha
Helix 21	AC3	A	467	476	Right-handed alpha
Helix 22	AC4	A	479	491	Right-handed alpha
Helix 23	AC5	B	55	60	Right-handed alpha
Helix 24	AC6	B	83	110	Right-handed alpha
Helix 25	AC7	B	120	129	Right-handed alpha
Helix 26	AC8	B	152	157	Right-handed alpha
Helix 27	AC9	B	163	173	Right-handed alpha
Helix 28	AD1	B	175	180	Right-handed alpha
Helix 29	AD2	B	196	203	Right-handed 310
Helix 30	AD3	B	204	214	Right-handed alpha
Helix 31	AD4	B	221	251	Right-handed alpha
Helix 32	AD5	B	271	288	Right-handed alpha
Helix 33	AD6	B	299	325	Right-handed alpha
Helix 34	AD7	B	334	352	Right-handed alpha
Helix 35	AD8	B	355	376	Right-handed alpha
Helix 36	AD9	B	385	397	Right-handed alpha
Helix 37	AE1	B	397	403	Right-handed alpha
Helix 38	AE2	B	411	420	Right-handed alpha
Helix 39	AE3	B	474	481	Right-handed alpha
Helix 40	AE4	B	503	510	Right-handed alpha
Helix 41	AE5	B	518	526	Right-handed alpha
Helix 42	AE6	C	54	81	Right-handed alpha
Helix 43	AE7	C	86	107	Right-handed alpha
Helix 44	AE8	C	123	132	Right-handed alpha
Helix 45	AE9	C	137	142	Right-handed alpha
Helix 46	AF1	C	145	153	Right-handed alpha
Helix 47	AF2	C	156	161	Right-handed alpha
Helix 48	AF3	C	162	167	Right-handed 310
Helix 49	AF4	C	168	181	Right-handed alpha
Helix 50	AF5	C	186	191	Right-handed alpha
Helix 51	AF6	C	192	215	Right-handed alpha
Helix 52	AF7	C	235	253	Right-handed alpha
Helix 53	AF8	C	263	290	Right-handed alpha
Helix 54	AF9	C	296	301	Right-handed alpha
Helix 55	AG1	C	302	307	Right-handed alpha
Helix 56	AG2	C	307	316	Right-handed alpha
Helix 57	AG3	C	322	339	Right-handed alpha
Helix 58	AG4	C	346	350	Right-handed 310
Helix 59	AG5	C	354	369	Right-handed alpha
Helix 60	AG6	C	379	387	Right-handed alpha
Helix 61	AG7	C	440	445	Right-handed alpha
Helix 62	AG8	C	467	476	Right-handed alpha
Helix 63	AG9	C	479	491	Right-handed alpha
Helix 64	AH1	D	55	60	Right-handed alpha
Helix 65	AH2	D	83	110	Right-handed alpha
Helix 66	AH3	D	120	129	Right-handed alpha
Helix 67	AH4	D	152	157	Right-handed alpha
Helix 68	AH5	D	163	173	Right-handed alpha
Helix 69	AH6	D	175	180	Right-handed alpha
Helix 70	AH7	D	196	203	Right-handed 310
Helix 71	AH8	D	204	214	Right-handed alpha
Helix 72	AH9	D	221	251	Right-handed alpha
Helix 73	AI1	D	271	288	Right-handed alpha
Helix 74	AI2	D	299	325	Right-handed alpha
Helix 75	AI3	D	332	352	Right-handed alpha
Helix 76	AI4	D	355	376	Right-handed alpha
Helix 77	AI5	D	385	397	Right-handed alpha
Helix 78	AI6	D	397	403	Right-handed alpha
Helix 79	AI7	D	411	420	Right-handed alpha
Helix 80	AI8	D	474	481	Right-handed alpha
Helix 81	AI9	D	503	510	Right-handed alpha
Helix 82	AJ1	D	518	526	Right-handed alpha

There are 12 sheets in PDB entry 7WM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	393	first strand
Strand 2	A	460	466	anti-parallel
Strand 3	A	408	414	anti-parallel
Strand 4	A	438	439	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	433	first strand
Strand 2	A	417	421	anti-parallel
Strand 3	A	453	456	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	149	150	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	427	first strand
Strand 2	B	494	498	anti-parallel
Strand 3	B	444	448	anti-parallel
Strand 4	B	472	473	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	434	first strand
Strand 2	B	487	490	anti-parallel
Strand 3	B	451	455	anti-parallel
Strand 4	B	462	467	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	393	first strand
Strand 2	C	460	466	anti-parallel
Strand 3	C	408	414	anti-parallel
Strand 4	C	438	439	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	429	first strand
Strand 2	C	417	421	anti-parallel
Strand 3	C	453	456	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	149	150	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	427	first strand
Strand 2	D	494	498	anti-parallel
Strand 3	D	444	448	anti-parallel
Strand 4	D	472	473	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	432	434	first strand
Strand 2	D	487	490	anti-parallel
Strand 3	D	451	455	anti-parallel
Strand 4	D	462	467	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM1