Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WM2 entry

There are 4 chains in PDB entry 7WM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 44	ARG 513
B	LYS 44	ALA 512
C	LYS 44	ARG 513
D	LYS 44	ALA 512

There are 89 helices in PDB entry 7WM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	82	Right-handed alpha
Helix 2	AA2	A	86	91	Right-handed alpha
Helix 3	AA3	A	91	107	Right-handed alpha
Helix 4	AA4	A	125	135	Right-handed alpha
Helix 5	AA5	A	135	142	Right-handed alpha
Helix 6	AA6	A	145	150	Right-handed alpha
Helix 7	AA7	A	159	167	Right-handed 310
Helix 8	AA8	A	168	180	Right-handed alpha
Helix 9	AA9	A	186	191	Right-handed alpha
Helix 10	AB1	A	191	216	Right-handed alpha
Helix 11	AB2	A	218	222	Right-handed 310
Helix 12	AB3	A	230	234	Right-handed 310
Helix 13	AB4	A	235	252	Right-handed alpha
Helix 14	AB5	A	263	316	Right-handed alpha
Helix 15	AB6	A	319	338	Right-handed alpha
Helix 16	AB7	A	344	349	Right-handed alpha
Helix 17	AB8	A	351	368	Right-handed alpha
Helix 18	AB9	A	377	387	Right-handed alpha
Helix 19	AC1	A	440	445	Right-handed alpha
Helix 20	AC2	A	467	475	Right-handed alpha
Helix 21	AC3	A	477	495	Right-handed alpha
Helix 22	AC4	A	497	508	Right-handed alpha
Helix 23	AC5	A	508	513	Right-handed alpha
Helix 24	AC6	B	54	82	Right-handed alpha
Helix 25	AC7	B	86	95	Right-handed alpha
Helix 26	AC8	B	95	107	Right-handed alpha
Helix 27	AC9	B	123	134	Right-handed alpha
Helix 28	AD1	B	135	142	Right-handed alpha
Helix 29	AD2	B	145	153	Right-handed alpha
Helix 30	AD3	B	156	164	Right-handed alpha
Helix 31	AD4	B	165	167	Right-handed 310
Helix 32	AD5	B	168	180	Right-handed alpha
Helix 33	AD6	B	185	215	Right-handed alpha
Helix 34	AD7	B	218	222	Right-handed 310
Helix 35	AD8	B	230	234	Right-handed 310
Helix 36	AD9	B	235	253	Right-handed alpha
Helix 37	AE1	B	263	294	Right-handed alpha
Helix 38	AE2	B	296	317	Right-handed alpha
Helix 39	AE3	B	319	346	Right-handed alpha
Helix 40	AE4	B	351	363	Right-handed alpha
Helix 41	AE5	B	365	369	Right-handed 310
Helix 42	AE6	B	377	387	Right-handed alpha
Helix 43	AE7	B	442	447	Right-handed alpha
Helix 44	AE8	B	467	475	Right-handed alpha
Helix 45	AE9	B	480	495	Right-handed alpha
Helix 46	AF1	B	500	505	Right-handed alpha
Helix 47	AF2	C	54	82	Right-handed alpha
Helix 48	AF3	C	86	106	Right-handed alpha
Helix 49	AF4	C	123	133	Right-handed alpha
Helix 50	AF5	C	135	142	Right-handed alpha
Helix 51	AF6	C	145	150	Right-handed alpha
Helix 52	AF7	C	159	167	Right-handed 310
Helix 53	AF8	C	168	180	Right-handed alpha
Helix 54	AF9	C	186	216	Right-handed alpha
Helix 55	AG1	C	218	222	Right-handed 310
Helix 56	AG2	C	230	234	Right-handed 310
Helix 57	AG3	C	235	252	Right-handed alpha
Helix 58	AG4	C	263	296	Right-handed alpha
Helix 59	AG5	C	296	316	Right-handed alpha
Helix 60	AG6	C	319	340	Right-handed alpha
Helix 61	AG7	C	344	350	Right-handed alpha
Helix 62	AG8	C	351	368	Right-handed alpha
Helix 63	AG9	C	377	387	Right-handed alpha
Helix 64	AH1	C	440	447	Right-handed alpha
Helix 65	AH2	C	467	475	Right-handed alpha
Helix 66	AH3	C	477	495	Right-handed alpha
Helix 67	AH4	C	501	508	Right-handed alpha
Helix 68	AH5	D	54	82	Right-handed alpha
Helix 69	AH6	D	86	95	Right-handed alpha
Helix 70	AH7	D	95	106	Right-handed alpha
Helix 71	AH8	D	123	134	Right-handed alpha
Helix 72	AH9	D	135	142	Right-handed alpha
Helix 73	AI1	D	145	153	Right-handed alpha
Helix 74	AI2	D	156	164	Right-handed alpha
Helix 75	AI3	D	165	167	Right-handed 310
Helix 76	AI4	D	168	179	Right-handed alpha
Helix 77	AI5	D	185	215	Right-handed alpha
Helix 78	AI6	D	218	222	Right-handed 310
Helix 79	AI7	D	235	252	Right-handed alpha
Helix 80	AI8	D	263	294	Right-handed alpha
Helix 81	AI9	D	299	315	Right-handed alpha
Helix 82	AJ1	D	319	349	Right-handed alpha
Helix 83	AJ2	D	351	362	Right-handed alpha
Helix 84	AJ3	D	370	374	Right-handed 310
Helix 85	AJ4	D	377	387	Right-handed alpha
Helix 86	AJ5	D	440	447	Right-handed alpha
Helix 87	AJ6	D	466	475	Right-handed alpha
Helix 88	AJ7	D	482	495	Right-handed alpha
Helix 89	AJ8	D	497	512	Right-handed alpha

There are 11 sheets in PDB entry 7WM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	393	first strand
Strand 2	A	460	466	anti-parallel
Strand 3	A	408	414	anti-parallel
Strand 4	A	438	439	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	433	first strand
Strand 2	A	417	423	anti-parallel
Strand 3	A	453	456	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	119	120	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	460	462	anti-parallel
Strand 3	B	408	414	anti-parallel
Strand 4	B	438	439	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	460	462	anti-parallel
Strand 3	B	408	414	anti-parallel
Strand 4	B	465	466	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	400	first strand
Strand 2	B	453	456	anti-parallel
Strand 3	B	417	420	anti-parallel
Strand 4	B	429	433	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	393	first strand
Strand 2	C	460	466	anti-parallel
Strand 3	C	408	414	anti-parallel
Strand 4	C	438	439	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	433	first strand
Strand 2	C	417	423	anti-parallel
Strand 3	C	455	456	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	120	121	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	393	first strand
Strand 2	D	460	463	anti-parallel
Strand 3	D	410	414	anti-parallel
Strand 4	D	438	439	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	398	400	first strand
Strand 2	D	453	456	anti-parallel
Strand 3	D	416	420	anti-parallel
Strand 4	D	429	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM2