Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WM3 entry

There are 4 chains in PDB entry 7WM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 15	MET 193
B	ARG 15	MET 193
C	ARG 15	MET 193
D	ARG 15	PRO 105

There are 34 helices in PDB entry 7WM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	20	Right-handed 310
Helix 2	AA2	A	33	42	Right-handed alpha
Helix 3	AA3	A	43	45	Right-handed 310
Helix 4	AA4	A	71	81	Right-handed alpha
Helix 5	AA5	A	98	102	Right-handed 310
Helix 6	AA6	A	124	133	Right-handed alpha
Helix 7	AA7	A	134	136	Right-handed 310
Helix 8	AA8	A	162	170	Right-handed alpha
Helix 9	AA9	A	189	193	Right-handed 310
Helix 10	AB1	B	17	20	Right-handed 310
Helix 11	AB2	B	33	42	Right-handed alpha
Helix 12	AB3	B	43	45	Right-handed 310
Helix 13	AB4	B	71	80	Right-handed alpha
Helix 14	AB5	B	98	102	Right-handed 310
Helix 15	AB6	B	124	133	Right-handed alpha
Helix 16	AB7	B	134	136	Right-handed 310
Helix 17	AB8	B	162	171	Right-handed alpha
Helix 18	AB9	C	17	20	Right-handed 310
Helix 19	AC1	C	33	42	Right-handed alpha
Helix 20	AC2	C	43	45	Right-handed 310
Helix 21	AC3	C	71	81	Right-handed alpha
Helix 22	AC4	C	98	102	Right-handed 310
Helix 23	AC5	C	124	133	Right-handed alpha
Helix 24	AC6	C	134	136	Right-handed 310
Helix 25	AC7	C	163	170	Right-handed alpha
Helix 26	AC8	D	17	20	Right-handed 310
Helix 27	AC9	D	33	42	Right-handed alpha
Helix 28	AD1	D	43	45	Right-handed 310
Helix 29	AD2	D	71	81	Right-handed alpha
Helix 30	AD3	D	98	102	Right-handed 310
Helix 31	AD4	D	124	133	Right-handed alpha
Helix 32	AD5	D	134	136	Right-handed 310
Helix 33	AD6	D	163	170	Right-handed alpha
Helix 34	AD7	D	189	193	Right-handed 310

There are 10 sheets in PDB entry 7WM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	54	first strand
Strand 2	A	61	69	anti-parallel
Strand 3	A	22	26	anti-parallel
Strand 4	A	89	95	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	145	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	113	117	anti-parallel
Strand 4	A	180	186	anti-parallel
Strand 5	A	174	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	54	first strand
Strand 2	B	61	69	anti-parallel
Strand 3	B	22	26	anti-parallel
Strand 4	B	92	95	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	89	90	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	145	first strand
Strand 2	B	152	160	anti-parallel
Strand 3	B	113	117	anti-parallel
Strand 4	B	180	186	anti-parallel
Strand 5	B	174	177	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	54	first strand
Strand 2	C	61	69	anti-parallel
Strand 3	C	22	26	anti-parallel
Strand 4	C	89	95	anti-parallel
Strand 5	C	84	86	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	145	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	113	117	anti-parallel
Strand 4	C	180	186	anti-parallel
Strand 5	C	174	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	54	first strand
Strand 2	D	61	69	anti-parallel
Strand 3	D	22	26	anti-parallel
Strand 4	D	92	95	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	89	90	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	145	first strand
Strand 2	D	152	160	anti-parallel
Strand 3	D	113	117	anti-parallel
Strand 4	D	180	186	anti-parallel
Strand 5	D	174	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM3