Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WM4 entry

There are 6 chains in PDB entry 7WM4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	CYS 29	LYS 698
D	GLN 28	LYS 698
E	CYS 29	LYS 698
F	GLN 28	LYS 698
A	A 5	U 85
B	A 6	U 86

There are 38 helices in PDB entry 7WM4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	93	99	Right-handed alpha
Helix 2	AA2	C	116	121	Right-handed 310
Helix 3	AA3	C	188	193	Right-handed alpha
Helix 4	AA4	C	235	246	Right-handed alpha
Helix 5	AA5	C	269	275	Right-handed 310
Helix 6	AA6	C	403	407	Right-handed 310
Helix 7	AA7	C	450	454	Right-handed 310
Helix 8	AA8	C	627	632	Right-handed alpha
Helix 9	AA9	C	633	636	Right-handed 310
Helix 10	AB1	C	655	664	Right-handed alpha
Helix 11	AB2	D	93	99	Right-handed alpha
Helix 12	AB3	D	117	121	Right-handed 310
Helix 13	AB4	D	235	246	Right-handed alpha
Helix 14	AB5	D	269	275	Right-handed 310
Helix 15	AB6	D	401	406	Right-handed 310
Helix 16	AB7	D	450	454	Right-handed 310
Helix 17	AB8	D	627	632	Right-handed alpha
Helix 18	AB9	D	633	636	Right-handed 310
Helix 19	AC1	D	655	664	Right-handed alpha
Helix 20	AC2	E	94	99	Right-handed alpha
Helix 21	AC3	E	116	121	Right-handed 310
Helix 22	AC4	E	235	246	Right-handed alpha
Helix 23	AC5	E	269	275	Right-handed 310
Helix 24	AC6	E	402	406	Right-handed 310
Helix 25	AC7	E	450	454	Right-handed 310
Helix 26	AC8	E	627	632	Right-handed alpha
Helix 27	AC9	E	633	636	Right-handed 310
Helix 28	AD1	E	655	664	Right-handed alpha
Helix 29	AD2	F	93	99	Right-handed alpha
Helix 30	AD3	F	117	121	Right-handed 310
Helix 31	AD4	F	235	246	Right-handed alpha
Helix 32	AD5	F	269	275	Right-handed 310
Helix 33	AD6	F	401	407	Right-handed 310
Helix 34	AD7	F	450	454	Right-handed 310
Helix 35	AD8	F	543	547	Right-handed 310
Helix 36	AD9	F	627	632	Right-handed alpha
Helix 37	AE1	F	633	636	Right-handed 310
Helix 38	AE2	F	651	664	Right-handed alpha

There are 39 sheets in PDB entry 7WM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	80	82	parallel
Strand 3	C	104	106	parallel
Strand 4	C	128	131	parallel
Strand 5	C	152	155	parallel
Strand 6	C	176	178	parallel
Strand 7	C	202	204	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	212	213	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	200	first strand
Strand 2	C	223	224	parallel

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There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	228	first strand
Strand 2	C	253	255	parallel
Strand 3	C	279	281	parallel
Strand 4	C	303	305	parallel
Strand 5	C	327	329	parallel
Strand 6	C	360	362	parallel
Strand 7	C	384	386	parallel
Strand 8	C	412	414	parallel
Strand 9	C	436	438	parallel
Strand 10	C	461	463	parallel
Strand 11	C	485	487	parallel
Strand 12	C	511	513	parallel
Strand 13	C	535	537	parallel
Strand 14	C	567	569	parallel
Strand 15	C	591	593	parallel
Strand 16	C	615	617	parallel
Strand 17	C	640	642	parallel
Strand 18	C	668	669	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	264	first strand
Strand 2	C	289	290	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	314	first strand
Strand 2	C	346	347	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	397	first strand
Strand 2	C	422	423	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	447	first strand
Strand 2	C	469	471	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	649	first strand
Strand 2	C	678	680	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	56	58	parallel
Strand 3	D	80	82	parallel
Strand 4	D	104	106	parallel
Strand 5	D	128	130	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	176	178	parallel
Strand 3	D	202	204	parallel
Strand 4	D	226	228	parallel
Strand 5	D	253	255	parallel
Strand 6	D	279	281	parallel
Strand 7	D	303	305	parallel
Strand 8	D	327	329	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	212	213	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	200	first strand
Strand 2	D	223	224	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	264	first strand
Strand 2	D	289	290	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	314	first strand
Strand 2	D	346	347	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	362	first strand
Strand 2	D	384	386	parallel
Strand 3	D	412	414	parallel
Strand 4	D	436	438	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	397	first strand
Strand 2	D	422	423	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	447	first strand
Strand 2	D	469	471	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	463	first strand
Strand 2	D	485	487	parallel
Strand 3	D	511	513	parallel
Strand 4	D	535	537	parallel
Strand 5	D	567	569	parallel
Strand 6	D	591	593	parallel
Strand 7	D	615	617	parallel
Strand 8	D	640	642	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	648	649	first strand
Strand 2	D	678	680	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	58	first strand
Strand 2	E	80	82	parallel

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There are 23 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	106	first strand
Strand 2	E	128	131	parallel
Strand 3	E	152	155	parallel
Strand 4	E	176	178	parallel
Strand 5	E	202	204	parallel
Strand 6	E	226	228	parallel
Strand 7	E	253	255	parallel
Strand 8	E	279	281	parallel
Strand 9	E	303	305	parallel
Strand 10	E	327	329	parallel
Strand 11	E	360	362	parallel
Strand 12	E	384	386	parallel
Strand 13	E	412	414	parallel
Strand 14	E	436	438	parallel
Strand 15	E	461	463	parallel
Strand 16	E	485	487	parallel
Strand 17	E	511	513	parallel
Strand 18	E	535	537	parallel
Strand 19	E	567	569	parallel
Strand 20	E	591	593	parallel
Strand 21	E	615	617	parallel
Strand 22	E	640	642	parallel
Strand 23	E	668	669	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	212	213	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	200	first strand
Strand 2	E	223	224	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	264	first strand
Strand 2	E	289	290	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	314	first strand
Strand 2	E	346	347	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	396	397	first strand
Strand 2	E	422	423	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	445	447	first strand
Strand 2	E	469	471	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	648	649	first strand
Strand 2	E	678	680	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	37	first strand
Strand 2	F	56	58	parallel
Strand 3	F	80	82	parallel

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There are 13 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	106	first strand
Strand 2	F	128	131	parallel
Strand 3	F	152	155	parallel
Strand 4	F	176	178	parallel
Strand 5	F	202	204	parallel
Strand 6	F	226	228	parallel
Strand 7	F	253	255	parallel
Strand 8	F	279	281	parallel
Strand 9	F	303	305	parallel
Strand 10	F	327	329	parallel
Strand 11	F	360	362	parallel
Strand 12	F	384	386	parallel
Strand 13	F	412	414	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	187	first strand
Strand 2	F	212	213	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	200	first strand
Strand 2	F	223	224	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	264	first strand
Strand 2	F	289	290	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	314	first strand
Strand 2	F	346	347	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	396	397	first strand
Strand 2	F	422	423	parallel

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There are 9 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	436	438	first strand
Strand 2	F	461	463	parallel
Strand 3	F	485	487	parallel
Strand 4	F	511	513	parallel
Strand 5	F	535	537	parallel
Strand 6	F	567	569	parallel
Strand 7	F	591	593	parallel
Strand 8	F	615	617	parallel
Strand 9	F	640	642	parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	445	447	first strand
Strand 2	F	469	471	parallel
Strand 3	F	493	494	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	648	649	first strand
Strand 2	F	678	680	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WM4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WM4