Analysis of interatomic Contacts of Structural Units in PDB entry:
7WN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WN8 entry

There are 6 chains in PDB entry 7WN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	VAL 134
C	GLN 19	LEU 129
H	GLN 1	ALA 214
L	GLU 1	GLU 214
P	GLN 1	GLU 215
Q	GLU 1	GLY 213

There are 27 helices in PDB entry 7WN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	52	Right-handed 310
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	88	94	Right-handed 310
Helix 4	AA4	A	102	108	Right-handed alpha
Helix 5	AA5	C	50	52	Right-handed 310
Helix 6	AA6	C	78	82	Right-handed 310
Helix 7	AA7	C	87	94	Right-handed 310
Helix 8	AA8	C	101	106	Right-handed alpha
Helix 9	AA9	H	28	31	Right-handed 310
Helix 10	AB1	H	62	65	Right-handed 310
Helix 11	AB2	H	87	91	Right-handed 310
Helix 12	AB3	H	159	161	Right-handed 310
Helix 13	AB4	H	190	195	Right-handed alpha
Helix 14	AB5	H	204	207	Right-handed 310
Helix 15	AB6	L	30	32	Right-handed 310
Helix 16	AB7	L	80	84	Right-handed 310
Helix 17	AB8	L	125	128	Right-handed 310
Helix 18	AB9	L	184	188	Right-handed alpha
Helix 19	AC1	P	28	31	Right-handed 310
Helix 20	AC2	P	62	65	Right-handed 310
Helix 21	AC3	P	87	91	Right-handed 310
Helix 22	AC4	P	188	193	Right-handed 310
Helix 23	AC5	P	204	207	Right-handed 310
Helix 24	AC6	Q	30	32	Right-handed 310
Helix 25	AC7	Q	80	84	Right-handed 310
Helix 26	AC8	Q	122	127	Right-handed alpha
Helix 27	AC9	Q	184	189	Right-handed alpha

There are 24 sheets in PDB entry 7WN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	121	131	parallel
Strand 3	A	110	118	anti-parallel
Strand 4	A	54	59	anti-parallel
Strand 5	A	64	69	anti-parallel
Strand 6	A	74	76	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	98	101	anti-parallel
Strand 3	A	85	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	39	first strand
Strand 2	C	98	100	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	63	69	anti-parallel
Strand 3	C	54	60	anti-parallel
Strand 4	C	111	118	anti-parallel
Strand 5	C	121	128	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	110	114	parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	166	168	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	172	173	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	157	first strand
Strand 2	H	198	203	anti-parallel
Strand 3	H	208	213	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	63	76	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	92	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	92	anti-parallel
Strand 4	L	97	99	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	155	first strand
Strand 2	L	145	151	anti-parallel
Strand 3	L	192	199	anti-parallel
Strand 4	L	206	211	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	18	25	anti-parallel
Strand 3	P	78	83	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	110	114	parallel
Strand 3	P	92	98	anti-parallel
Strand 4	P	33	39	anti-parallel
Strand 5	P	46	52	anti-parallel
Strand 6	P	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	123	127	first strand
Strand 2	P	140	148	anti-parallel
Strand 3	P	179	186	anti-parallel
Strand 4	P	167	168	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	123	127	first strand
Strand 2	P	140	148	anti-parallel
Strand 3	P	179	186	anti-parallel
Strand 4	P	172	173	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	154	157	first strand
Strand 2	P	197	203	anti-parallel
Strand 3	P	208	214	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	7	first strand
Strand 2	Q	19	29	anti-parallel
Strand 3	Q	63	76	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	13	first strand
Strand 2	Q	103	107	parallel
Strand 3	Q	86	92	anti-parallel
Strand 4	Q	34	39	anti-parallel
Strand 5	Q	46	50	anti-parallel
Strand 6	Q	54	55	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	13	first strand
Strand 2	Q	103	107	parallel
Strand 3	Q	86	92	anti-parallel
Strand 4	Q	97	99	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	115	119	first strand
Strand 2	Q	130	140	anti-parallel
Strand 3	Q	174	183	anti-parallel
Strand 4	Q	160	164	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	154	155	first strand
Strand 2	Q	146	151	anti-parallel
Strand 3	Q	192	198	anti-parallel
Strand 4	Q	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WN8