Analysis of interatomic Contacts of Structural Units in PDB entry:
7WOI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WOI entry

There are 2 chains in PDB entry 7WOI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 36	LYS 469
B	GLN 36	LYS 469

There are 8 helices in PDB entry 7WOI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	110	Right-handed 310
Helix 2	AA2	A	119	127	Right-handed alpha
Helix 3	AA3	A	207	215	Right-handed alpha
Helix 4	AA4	A	286	291	Right-handed alpha
Helix 5	AA5	B	105	110	Right-handed 310
Helix 6	AA6	B	119	124	Right-handed alpha
Helix 7	AA7	B	207	215	Right-handed alpha
Helix 8	AA8	B	286	291	Right-handed alpha

There are 20 sheets in PDB entry 7WOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	150	first strand
Strand 2	A	50	56	anti-parallel
Strand 3	A	188	191	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	194	197	parallel
Strand 3	A	165	167	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	83	91	anti-parallel
Strand 3	A	134	137	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	83	91	anti-parallel
Strand 3	A	153	160	anti-parallel
Strand 4	A	172	175	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	185	186	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	221	229	anti-parallel
Strand 3	A	298	307	anti-parallel
Strand 4	A	253	263	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	328	333	anti-parallel
Strand 4	A	336	339	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	317	first strand
Strand 2	A	345	357	anti-parallel
Strand 3	A	412	419	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	317	first strand
Strand 2	A	345	357	anti-parallel
Strand 3	A	455	466	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	391	395	anti-parallel
Strand 3	A	368	372	anti-parallel
Strand 4	A	429	437	anti-parallel
Strand 5	A	448	452	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	150	first strand
Strand 2	B	50	56	anti-parallel
Strand 3	B	188	191	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	194	197	parallel
Strand 3	B	165	167	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	83	91	anti-parallel
Strand 3	B	134	137	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	83	91	anti-parallel
Strand 3	B	152	160	anti-parallel
Strand 4	B	172	176	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	185	186	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	221	229	anti-parallel
Strand 3	B	298	306	anti-parallel
Strand 4	B	255	263	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	242	247	anti-parallel
Strand 3	B	328	333	anti-parallel
Strand 4	B	336	339	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	345	357	anti-parallel
Strand 3	B	412	419	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	317	first strand
Strand 2	B	345	357	anti-parallel
Strand 3	B	455	466	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	403	first strand
Strand 2	B	391	395	anti-parallel
Strand 3	B	368	372	anti-parallel
Strand 4	B	429	437	anti-parallel
Strand 5	B	448	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WOI

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WOI