Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WPI entry

There is 1 chain in PDB entry 7WPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1PRO 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7WPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 40Right-handed alpha
Helix 2
AA2
A
54 64Right-handed alpha
Helix 3
AA3
A
67 86Right-handed alpha
Helix 4
AA4
A
98 115Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
174 176Right-handed 310
Helix 7
AA7
A
177 188Right-handed alpha
Helix 8
AA8
A
196 205Right-handed alpha
Helix 9
AA9
A
235 242Right-handed alpha
Helix 10
AB1
A
242 247Right-handed alpha
Helix 11
AB2
A
255 262Right-handed alpha
Helix 12
AB3
A
273 279Right-handed alpha
Helix 13
AB4
A
279 288Right-handed alpha
Helix 14
AB5
A
310 314Right-handed 310
Helix 15
AB6
A
318 327Right-handed alpha
Helix 16
AB7
A
327 339Right-handed alpha
Helix 17
AB8
A
348 359Right-handed alpha
Helix 18
AB9
A
362 380Right-handed alpha
Helix 19
AC1
A
393 414Right-handed alpha
Helix 20
AC2
A
416 439Right-handed alpha
Helix 21
AC3
A
439 444Right-handed alpha
Helix 22
AC4
A
449 471Right-handed alpha
Helix 23
AC5
A
477 487Right-handed alpha
Helix 24
AC6
A
490 500Right-handed 310
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There are 6 sheets in PDB entry 7WPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
43 50parallel
Strand 3
A
5 9parallel
Strand 4
A
266 270parallel
Strand 5
A
296 299parallel
Strand 6
A
192 193parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
118 128anti-parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
213 214anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 146first strand
Strand 2
A
149 154anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
229 234anti-parallel
Strand 3
A
225 226anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
345 346parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
509 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il