Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WPJ entry

There is 1 chain in PDB entry 7WPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PRO 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7WPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 40Right-handed alpha
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
67 87Right-handed alpha
Helix 4
AA4
A
98 115Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
174 176Right-handed 310
Helix 7
AA7
A
177 188Right-handed alpha
Helix 8
AA8
A
194 202Right-handed 310
Helix 9
AA9
A
235 247Right-handed alpha
Helix 10
AB1
A
255 262Right-handed alpha
Helix 11
AB2
A
273 279Right-handed alpha
Helix 12
AB3
A
279 288Right-handed alpha
Helix 13
AB4
A
318 327Right-handed alpha
Helix 14
AB5
A
327 339Right-handed alpha
Helix 15
AB6
A
348 359Right-handed alpha
Helix 16
AB7
A
362 380Right-handed alpha
Helix 17
AB8
A
393 414Right-handed alpha
Helix 18
AB9
A
416 439Right-handed alpha
Helix 19
AC1
A
439 446Right-handed alpha
Helix 20
AC2
A
449 472Right-handed alpha
Helix 21
AC3
A
477 487Right-handed alpha
Helix 22
AC4
A
490 500Right-handed 310
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There are 4 sheets in PDB entry 7WPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
43 50parallel
Strand 3
A
5 13parallel
Strand 4
A
266 270parallel
Strand 5
A
296 299parallel
Strand 6
A
192 193parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
118 127anti-parallel
Strand 3
A
163 172anti-parallel
Strand 4
A
213 214anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
233 234anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
509 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il