Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WPO entry

There are 2 chains in PDB entry 7WPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21ALA 712
B
 CYS 386LYS 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 7WPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 54Right-handed alpha
Helix 2
AA2
A
56 81Right-handed alpha
Helix 3
AA3
A
82 84Right-handed 310
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
91 103Right-handed alpha
Helix 6
AA6
A
104 109Right-handed 310
Helix 7
AA7
A
110 130Right-handed alpha
Helix 8
AA8
A
145 155Right-handed alpha
Helix 9
AA9
A
157 172Right-handed alpha
Helix 10
AB1
A
172 193Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
206 208Right-handed 310
Helix 13
AB4
A
218 220Right-handed 310
Helix 14
AB5
A
221 233Right-handed alpha
Helix 15
AB6
A
233 249Right-handed alpha
Helix 16
AB7
A
265 267Right-handed 310
Helix 17
AB8
A
275 282Right-handed 310
Helix 18
AB9
A
293 300Right-handed alpha
Helix 19
AC1
A
303 319Right-handed alpha
Helix 20
AC2
A
324 331Right-handed alpha
Helix 21
AC3
A
365 385Right-handed alpha
Helix 22
AC4
A
386 388Right-handed 310
Helix 23
AC5
A
389 393Right-handed 310
Helix 24
AC6
A
397 414Right-handed alpha
Helix 25
AC7
A
414 421Right-handed alpha
Helix 26
AC8
A
433 447Right-handed alpha
Helix 27
AC9
A
449 466Right-handed alpha
Helix 28
AD1
A
469 471Right-handed 310
Helix 29
AD2
A
472 485Right-handed alpha
Helix 30
AD3
A
499 502Right-handed 310
Helix 31
AD4
A
503 508Right-handed alpha
Helix 32
AD5
A
513 533Right-handed alpha
Helix 33
AD6
A
538 542Right-handed 310
Helix 34
AD7
A
547 559Right-handed alpha
Helix 35
AD8
A
565 575Right-handed alpha
Helix 36
AD9
A
581 588Right-handed alpha
Helix 37
AE1
A
588 600Right-handed alpha
Helix 38
AE2
A
635 656Right-handed alpha
Helix 39
AE3
A
664 666Right-handed 310
Helix 40
AE4
A
694 705Right-handed alpha
Helix 41
AE5
B
413 421Right-handed alpha
Helix 42
AE6
B
434 438Right-handed 310
Helix 43
AE7
B
452 460Right-handed 310
Helix 44
AE8
B
465 470Right-handed alpha
Helix 45
AE9
B
523 531Right-handed alpha
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There are 7 sheets in PDB entry 7WPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
142 144anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
216 217anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 620first strand
Strand 2
A
678 683anti-parallel
Strand 3
A
668 670anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 407first strand
Strand 2
B
443 450anti-parallel
Strand 3
B
564 573anti-parallel
Strand 4
B
482 487anti-parallel
Strand 5
B
425 427anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 513first strand
Strand 2
B
500 507anti-parallel
Strand 3
B
547 555anti-parallel
Strand 4
B
540 544anti-parallel
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