Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WPP entry

There are 4 chains in PDB entry 7WPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 30	MET 740
F	CYS 767	GLY 1241
G	SER 30	MET 740
H	CYS 767	GLY 1241

There are 52 helices in PDB entry 7WPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	114	118	Right-handed 310
Helix 2	AA2	E	153	155	Right-handed 310
Helix 3	AA3	E	183	189	Right-handed alpha
Helix 4	AA4	E	190	192	Right-handed 310
Helix 5	AA5	E	215	222	Right-handed alpha
Helix 6	AA6	E	226	231	Right-handed alpha
Helix 7	AA7	E	243	252	Right-handed alpha
Helix 8	AA8	E	264	278	Right-handed alpha
Helix 9	AA9	E	344	348	Right-handed 310
Helix 10	AB1	E	514	517	Right-handed 310
Helix 11	AB2	E	545	551	Right-handed alpha
Helix 12	AB3	E	568	572	Right-handed 310
Helix 13	AB4	E	573	575	Right-handed 310
Helix 14	AB5	E	576	584	Right-handed alpha
Helix 15	AB6	E	589	593	Right-handed 310
Helix 16	AB7	E	601	613	Right-handed alpha
Helix 17	AB8	E	617	637	Right-handed alpha
Helix 18	AB9	E	668	673	Right-handed alpha
Helix 19	AC1	F	1017	1023	Right-handed alpha
Helix 20	AC2	F	1024	1026	Right-handed 310
Helix 21	AC3	F	1049	1061	Right-handed alpha
Helix 22	AC4	F	1062	1067	Right-handed 310
Helix 23	AC5	F	1068	1073	Right-handed alpha
Helix 24	AC6	F	1077	1091	Right-handed alpha
Helix 25	AC7	F	1100	1114	Right-handed alpha
Helix 26	AC8	F	1131	1136	Right-handed alpha
Helix 27	AC9	G	114	118	Right-handed 310
Helix 28	AD1	G	153	155	Right-handed 310
Helix 29	AD2	G	183	189	Right-handed alpha
Helix 30	AD3	G	190	192	Right-handed 310
Helix 31	AD4	G	215	222	Right-handed alpha
Helix 32	AD5	G	226	231	Right-handed alpha
Helix 33	AD6	G	243	252	Right-handed alpha
Helix 34	AD7	G	264	278	Right-handed alpha
Helix 35	AD8	G	344	348	Right-handed 310
Helix 36	AD9	G	514	517	Right-handed 310
Helix 37	AE1	G	545	551	Right-handed alpha
Helix 38	AE2	G	568	572	Right-handed 310
Helix 39	AE3	G	573	575	Right-handed 310
Helix 40	AE4	G	576	584	Right-handed alpha
Helix 41	AE5	G	589	593	Right-handed 310
Helix 42	AE6	G	601	613	Right-handed alpha
Helix 43	AE7	G	617	637	Right-handed alpha
Helix 44	AE8	G	668	673	Right-handed alpha
Helix 45	AE9	H	1017	1023	Right-handed alpha
Helix 46	AF1	H	1024	1026	Right-handed 310
Helix 47	AF2	H	1049	1061	Right-handed alpha
Helix 48	AF3	H	1062	1067	Right-handed 310
Helix 49	AF4	H	1068	1073	Right-handed alpha
Helix 50	AF5	H	1077	1091	Right-handed alpha
Helix 51	AF6	H	1100	1114	Right-handed alpha
Helix 52	AF7	H	1131	1136	Right-handed alpha

There are 40 sheets in PDB entry 7WPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	146	151	anti-parallel
Strand 3	E	136	140	anti-parallel
Strand 4	E	126	130	anti-parallel
Strand 5	E	119	123	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	44	first strand
Strand 2	E	50	52	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	62	first strand
Strand 2	E	71	76	anti-parallel
Strand 3	E	81	88	anti-parallel
Strand 4	E	92	97	anti-parallel
Strand 5	E	102	104	anti-parallel
Strand 6	E	107	108	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	305	first strand
Strand 2	E	326	330	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	337	first strand
Strand 2	E	342	343	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	351	first strand
Strand 2	E	356	357	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	364	first strand
Strand 2	E	369	373	anti-parallel
Strand 3	E	376	379	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	403	405	first strand
Strand 2	E	395	397	anti-parallel
Strand 3	E	386	391	anti-parallel
Strand 4	E	509	512	anti-parallel
Strand 5	E	498	500	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	469	470	first strand
Strand 2	E	464	466	anti-parallel
Strand 3	E	454	458	anti-parallel
Strand 4	E	439	448	anti-parallel
Strand 5	E	424	431	anti-parallel
Strand 6	E	411	417	anti-parallel
Strand 7	E	520	521	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	480	484	first strand
Strand 2	E	490	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	536	537	first strand
Strand 2	E	541	542	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	657	659	first strand
Strand 2	E	686	688	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	721	723	first strand
Strand 2	E	728	730	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	772	773	first strand
Strand 2	F	808	809	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	841	844	first strand
Strand 2	F	847	851	anti-parallel
Strand 3	F	856	858	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	865	866	first strand
Strand 2	F	983	984	anti-parallel
Strand 3	F	970	974	anti-parallel
Strand 4	F	961	967	anti-parallel
Strand 5	F	954	958	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	875	876	first strand
Strand 2	F	882	883	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	890	895	first strand
Strand 2	F	905	912	anti-parallel
Strand 3	F	922	929	anti-parallel
Strand 4	F	933	937	anti-parallel
Strand 5	F	940	945	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1144	1151	first strand
Strand 2	F	1169	1175	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1182	1183	first strand
Strand 2	F	1190	1191	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	37	first strand
Strand 2	G	146	151	anti-parallel
Strand 3	G	136	140	anti-parallel
Strand 4	G	126	130	anti-parallel
Strand 5	G	119	123	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	44	first strand
Strand 2	G	50	52	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	62	first strand
Strand 2	G	71	76	anti-parallel
Strand 3	G	81	88	anti-parallel
Strand 4	G	92	97	anti-parallel
Strand 5	G	102	104	anti-parallel
Strand 6	G	107	108	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	300	305	first strand
Strand 2	G	326	330	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	336	337	first strand
Strand 2	G	342	343	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	351	first strand
Strand 2	G	356	357	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	362	364	first strand
Strand 2	G	369	373	anti-parallel
Strand 3	G	376	379	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	403	405	first strand
Strand 2	G	395	397	anti-parallel
Strand 3	G	386	391	anti-parallel
Strand 4	G	509	512	anti-parallel
Strand 5	G	498	500	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	469	470	first strand
Strand 2	G	464	466	anti-parallel
Strand 3	G	454	458	anti-parallel
Strand 4	G	439	448	anti-parallel
Strand 5	G	424	431	anti-parallel
Strand 6	G	411	417	anti-parallel
Strand 7	G	520	521	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	480	484	first strand
Strand 2	G	490	494	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	536	537	first strand
Strand 2	G	541	542	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	657	659	first strand
Strand 2	G	686	688	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	721	723	first strand
Strand 2	G	728	730	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	772	773	first strand
Strand 2	H	808	809	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	841	844	first strand
Strand 2	H	847	851	anti-parallel
Strand 3	H	856	858	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	865	866	first strand
Strand 2	H	983	984	anti-parallel
Strand 3	H	970	974	anti-parallel
Strand 4	H	961	967	anti-parallel
Strand 5	H	954	958	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	875	876	first strand
Strand 2	H	882	883	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	890	895	first strand
Strand 2	H	905	912	anti-parallel
Strand 3	H	922	929	anti-parallel
Strand 4	H	933	937	anti-parallel
Strand 5	H	940	945	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1144	1151	first strand
Strand 2	H	1169	1175	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1182	1183	first strand
Strand 2	H	1190	1191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPP