Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WPY entry

There are 4 chains in PDB entry 7WPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	LYS 291
B	SER 7	LYS 291
C	MET 8	LYS 291
D	MET 8	LYS 291

There are 43 helices in PDB entry 7WPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	40	53	Right-handed alpha
Helix 3	AA3	A	82	87	Right-handed alpha
Helix 4	AA4	A	87	93	Right-handed alpha
Helix 5	AA5	A	97	109	Right-handed alpha
Helix 6	AA6	A	136	147	Right-handed 310
Helix 7	AA7	A	190	194	Right-handed 310
Helix 8	AA8	A	246	251	Right-handed alpha
Helix 9	AA9	A	254	261	Right-handed alpha
Helix 10	AB1	A	281	287	Right-handed alpha
Helix 11	AB2	B	19	31	Right-handed alpha
Helix 12	AB3	B	40	53	Right-handed alpha
Helix 13	AB4	B	82	87	Right-handed alpha
Helix 14	AB5	B	87	93	Right-handed alpha
Helix 15	AB6	B	97	109	Right-handed alpha
Helix 16	AB7	B	136	147	Right-handed 310
Helix 17	AB8	B	190	194	Right-handed 310
Helix 18	AB9	B	246	251	Right-handed alpha
Helix 19	AC1	B	254	261	Right-handed alpha
Helix 20	AC2	B	281	287	Right-handed alpha
Helix 21	AC3	C	19	31	Right-handed alpha
Helix 22	AC4	C	40	54	Right-handed alpha
Helix 23	AC5	C	82	87	Right-handed alpha
Helix 24	AC6	C	87	93	Right-handed alpha
Helix 25	AC7	C	94	96	Right-handed 310
Helix 26	AC8	C	97	109	Right-handed alpha
Helix 27	AC9	C	136	147	Right-handed 310
Helix 28	AD1	C	167	171	Right-handed 310
Helix 29	AD2	C	190	194	Right-handed 310
Helix 30	AD3	C	246	251	Right-handed alpha
Helix 31	AD4	C	254	261	Right-handed alpha
Helix 32	AD5	C	281	287	Right-handed alpha
Helix 33	AD6	D	19	31	Right-handed alpha
Helix 34	AD7	D	40	53	Right-handed alpha
Helix 35	AD8	D	82	87	Right-handed alpha
Helix 36	AD9	D	87	93	Right-handed alpha
Helix 37	AE1	D	97	109	Right-handed alpha
Helix 38	AE2	D	136	147	Right-handed 310
Helix 39	AE3	D	167	171	Right-handed 310
Helix 40	AE4	D	190	194	Right-handed 310
Helix 41	AE5	D	246	251	Right-handed alpha
Helix 42	AE6	D	254	261	Right-handed alpha
Helix 43	AE7	D	281	287	Right-handed alpha

There are 12 sheets in PDB entry 7WPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	32	36	parallel
Strand 3	A	204	208	anti-parallel
Strand 4	A	157	162	anti-parallel
Strand 5	A	224	233	anti-parallel
Strand 6	A	115	125	anti-parallel
Strand 7	A	77	80	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	212	214	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	273	274	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	32	36	parallel
Strand 3	B	204	208	anti-parallel
Strand 4	B	157	162	anti-parallel
Strand 5	B	224	233	anti-parallel
Strand 6	B	115	125	anti-parallel
Strand 7	B	77	80	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	213	214	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	273	274	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	32	36	parallel
Strand 3	C	204	208	anti-parallel
Strand 4	C	157	162	anti-parallel
Strand 5	C	224	233	anti-parallel
Strand 6	C	115	125	anti-parallel
Strand 7	C	77	80	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	213	214	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	273	274	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	32	36	parallel
Strand 3	D	204	208	anti-parallel
Strand 4	D	157	162	anti-parallel
Strand 5	D	224	233	anti-parallel
Strand 6	D	115	125	anti-parallel
Strand 7	D	77	80	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	175	first strand
Strand 2	D	213	214	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	273	274	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPY