Analysis of interatomic Contacts of Structural Units in PDB entry:
7WPZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WPZ entry

There are 2 chains in PDB entry 7WPZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21GLN 615
B
 CYS 387PRO 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 7WPZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 53Right-handed alpha
Helix 2
AA2
A
56 82Right-handed alpha
Helix 3
AA3
A
91 102Right-handed alpha
Helix 4
AA4
A
110 130Right-handed alpha
Helix 5
AA5
A
145 153Right-handed alpha
Helix 6
AA6
A
157 194Right-handed alpha
Helix 7
AA7
A
198 205Right-handed alpha
Helix 8
AA8
A
206 208Right-handed 310
Helix 9
AA9
A
218 252Right-handed alpha
Helix 10
AB1
A
265 267Right-handed 310
Helix 11
AB2
A
275 277Right-handed 310
Helix 12
AB3
A
278 283Right-handed alpha
Helix 13
AB4
A
293 300Right-handed alpha
Helix 14
AB5
A
303 319Right-handed alpha
Helix 15
AB6
A
324 331Right-handed alpha
Helix 16
AB7
A
367 385Right-handed alpha
Helix 17
AB8
A
386 388Right-handed 310
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
397 414Right-handed alpha
Helix 20
AC2
A
414 421Right-handed alpha
Helix 21
AC3
A
431 447Right-handed alpha
Helix 22
AC4
A
449 466Right-handed alpha
Helix 23
AC5
A
469 471Right-handed 310
Helix 24
AC6
A
472 485Right-handed alpha
Helix 25
AC7
A
498 502Right-handed 310
Helix 26
AC8
A
503 508Right-handed alpha
Helix 27
AC9
A
512 534Right-handed alpha
Helix 28
AD1
A
547 559Right-handed alpha
Helix 29
AD2
A
565 575Right-handed alpha
Helix 30
AD3
A
581 588Right-handed alpha
Helix 31
AD4
A
588 600Right-handed alpha
Helix 32
AD5
A
610 615Right-handed 310
Helix 33
AD6
B
389 393Right-handed 310
Helix 34
AD7
B
417 422Right-handed alpha
Helix 35
AD8
B
433 438Right-handed alpha
Helix 36
AD9
B
453 460Right-handed 310
Helix 37
AE1
B
466 471Right-handed alpha
Helix 38
AE2
B
524 533Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7WPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
142 144anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 408first strand
Strand 2
B
444 451anti-parallel
Strand 3
B
567 574anti-parallel
Strand 4
B
484 487anti-parallel
Strand 5
B
423 427anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 412first strand
Strand 2
B
582 583parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
513 514first strand
Strand 2
B
501 508anti-parallel
Strand 3
B
548 556anti-parallel
Strand 4
B
541 545anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il