Analysis of interatomic Contacts of Structural Units in PDB entry:
7WQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WQ5 entry

There are 6 chains in PDB entry 7WQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 59ILE 230
B
 ARG 62ILE 226
F
 G 1 A 24
C
 T 1 C 24
D
 G 1 A 24
E
 T 1 C 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7WQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 123Right-handed alpha
Helix 2
AA2
A
131 134Right-handed 310
Helix 3
AA3
A
135 144Right-handed alpha
Helix 4
AA4
A
146 157Right-handed alpha
Helix 5
AA5
A
200 217Right-handed alpha
Helix 6
AA6
A
225 230Right-handed 310
Helix 7
AA7
B
106 123Right-handed alpha
Helix 8
AA8
B
131 134Right-handed 310
Helix 9
AA9
B
135 145Right-handed alpha
Helix 10
AB1
B
146 157Right-handed alpha
Helix 11
AB2
B
200 214Right-handed alpha
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There are 4 sheets in PDB entry 7WQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
78 88anti-parallel
Strand 3
A
95 104anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
179 186anti-parallel
Strand 3
A
191 198anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
78 89anti-parallel
Strand 3
B
94 104anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
180 185anti-parallel
Strand 3
B
192 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il