Analysis of interatomic Contacts of Structural Units in PDB entry:
7WQP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WQP entry

There are 2 chains in PDB entry 7WQP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASN 405	ASN 496
A	ASP 219	LEU 743

There are 5 helices in PDB entry 7WQP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	251	256	Right-handed 310
Helix 2	AA2	A	288	293	Right-handed alpha
Helix 3	AA3	A	294	303	Right-handed alpha
Helix 4	AA4	A	396	400	Right-handed 310
Helix 5	AA5	A	554	556	Right-handed 310

There are 16 sheets in PDB entry 7WQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	409	410	first strand
Strand 2	R	433	434	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	416	420	first strand
Strand 2	R	486	496	parallel
Strand 3	R	471	481	anti-parallel
Strand 4	R	439	448	anti-parallel
Strand 5	R	457	458	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	427	429	first strand
Strand 2	R	462	464	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	690	694	anti-parallel
Strand 3	A	308	310	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	245	first strand
Strand 2	A	685	688	anti-parallel
Strand 3	A	312	318	anti-parallel
Strand 4	A	411	416	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	336	first strand
Strand 2	A	323	328	anti-parallel
Strand 3	A	680	683	anti-parallel
Strand 4	A	247	249	anti-parallel
Strand 5	A	372	373	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	275	277	anti-parallel
Strand 3	A	379	381	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	654	658	anti-parallel
Strand 3	A	342	346	anti-parallel
Strand 4	A	403	405	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	740	741	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	451	first strand
Strand 2	A	459	464	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	612	613	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	605	606	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	488	490	first strand
Strand 2	A	534	536	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	544	first strand
Strand 2	A	558	560	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	581	first strand
Strand 2	A	600	602	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	628	first strand
Strand 2	A	645	647	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WQP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WQP