Analysis of interatomic Contacts of Structural Units in PDB entry:
7WR8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WR8 entry

There are 3 chains in PDB entry 7WR8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ASN 334	GLY 526
A	VAL 2	VAL 127
B	ASP 3	THR 106

There are 8 helices in PDB entry 7WR8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	338	343	Right-handed alpha
Helix 2	AA2	R	349	353	Right-handed 310
Helix 3	AA3	R	364	369	Right-handed 310
Helix 4	AA4	R	383	387	Right-handed 310
Helix 5	AA5	R	405	407	Right-handed 310
Helix 6	AA6	R	417	422	Right-handed alpha
Helix 7	AA7	A	62	65	Right-handed 310
Helix 8	AA8	A	87	91	Right-handed 310

There are 8 sheets in PDB entry 7WR8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	354	358	first strand
Strand 2	R	395	403	anti-parallel
Strand 3	R	507	514	anti-parallel
Strand 4	R	432	437	anti-parallel
Strand 5	R	378	379	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	452	454	first strand
Strand 2	R	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	473	474	first strand
Strand 2	R	488	489	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	21	25	anti-parallel
Strand 3	A	78	80	anti-parallel
Strand 4	A	71	73	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	83	84	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	34	39	anti-parallel
Strand 4	A	93	97	anti-parallel
Strand 5	A	123	124	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	17	24	anti-parallel
Strand 3	B	69	75	anti-parallel
Strand 4	B	61	64	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	103	106	parallel
Strand 3	B	84	86	anti-parallel
Strand 4	B	34	37	anti-parallel
Strand 5	B	44	47	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WR8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WR8