Analysis of interatomic Contacts of Structural Units in PDB entry:
7WSB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WSB entry

There are 5 chains in PDB entry 7WSB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	PRO 290
B	ASP 4	PRO 290
C	LYS 6	PRO 290
D	ASP 4	PRO 290
E	LYS 6	GLY 122

There are 73 helices in PDB entry 7WSB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	28	Right-handed alpha
Helix 2	AA2	A	38	54	Right-handed alpha
Helix 3	AA3	A	64	68	Right-handed 310
Helix 4	AA4	A	77	81	Right-handed 310
Helix 5	AA5	A	82	88	Right-handed alpha
Helix 6	AA6	A	92	103	Right-handed alpha
Helix 7	AA7	A	130	141	Right-handed 310
Helix 8	AA8	A	171	175	Right-handed 310
Helix 9	AA9	A	182	186	Right-handed 310
Helix 10	AB1	A	240	246	Right-handed alpha
Helix 11	AB2	A	248	255	Right-handed alpha
Helix 12	AB3	A	278	283	Right-handed alpha
Helix 13	AB4	B	17	28	Right-handed alpha
Helix 14	AB5	B	38	55	Right-handed alpha
Helix 15	AB6	B	64	68	Right-handed 310
Helix 16	AB7	B	77	81	Right-handed 310
Helix 17	AB8	B	82	88	Right-handed alpha
Helix 18	AB9	B	92	103	Right-handed alpha
Helix 19	AC1	B	130	141	Right-handed 310
Helix 20	AC2	B	171	175	Right-handed 310
Helix 21	AC3	B	182	186	Right-handed 310
Helix 22	AC4	B	240	246	Right-handed alpha
Helix 23	AC5	B	248	255	Right-handed alpha
Helix 24	AC6	B	278	282	Right-handed alpha
Helix 25	AC7	C	17	28	Right-handed alpha
Helix 26	AC8	C	38	54	Right-handed alpha
Helix 27	AC9	C	64	68	Right-handed 310
Helix 28	AD1	C	77	81	Right-handed 310
Helix 29	AD2	C	82	88	Right-handed alpha
Helix 30	AD3	C	89	91	Right-handed 310
Helix 31	AD4	C	92	103	Right-handed alpha
Helix 32	AD5	C	130	141	Right-handed 310
Helix 33	AD6	C	171	175	Right-handed 310
Helix 34	AD7	C	182	186	Right-handed 310
Helix 35	AD8	C	240	246	Right-handed alpha
Helix 36	AD9	C	248	255	Right-handed alpha
Helix 37	AE1	C	278	283	Right-handed alpha
Helix 38	AE2	D	17	28	Right-handed alpha
Helix 39	AE3	D	38	55	Right-handed alpha
Helix 40	AE4	D	64	68	Right-handed 310
Helix 41	AE5	D	77	81	Right-handed 310
Helix 42	AE6	D	82	88	Right-handed alpha
Helix 43	AE7	D	92	103	Right-handed alpha
Helix 44	AE8	D	130	141	Right-handed 310
Helix 45	AE9	D	171	175	Right-handed 310
Helix 46	AF1	D	182	186	Right-handed 310
Helix 47	AF2	D	240	246	Right-handed alpha
Helix 48	AF3	D	248	255	Right-handed alpha
Helix 49	AF4	D	278	283	Right-handed alpha
Helix 50	AF5	E	17	28	Right-handed alpha
Helix 51	AF6	E	38	55	Right-handed alpha
Helix 52	AF7	E	64	68	Right-handed 310
Helix 53	AF8	E	77	81	Right-handed 310
Helix 54	AF9	E	82	88	Right-handed alpha
Helix 55	AG1	E	92	103	Right-handed alpha
Helix 56	AG2	E	130	141	Right-handed 310
Helix 57	AG3	E	171	175	Right-handed 310
Helix 58	AG4	E	182	186	Right-handed 310
Helix 59	AG5	E	240	245	Right-handed alpha
Helix 60	AG6	E	248	255	Right-handed alpha
Helix 61	AG7	E	277	282	Right-handed alpha
Helix 62	AG8	F	17	28	Right-handed alpha
Helix 63	AG9	F	38	55	Right-handed alpha
Helix 64	AH1	F	64	68	Right-handed 310
Helix 65	AH2	F	77	81	Right-handed 310
Helix 66	AH3	F	82	88	Right-handed alpha
Helix 67	AH4	F	92	103	Right-handed alpha
Helix 68	AH5	F	130	141	Right-handed 310
Helix 69	AH6	F	171	175	Right-handed 310
Helix 70	AH7	F	182	186	Right-handed 310
Helix 71	AH8	F	240	245	Right-handed alpha
Helix 72	AH9	F	248	255	Right-handed alpha
Helix 73	AI1	F	278	282	Right-handed alpha

There are 17 sheets in PDB entry 7WSB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	196	200	anti-parallel
Strand 4	A	149	155	anti-parallel
Strand 5	A	218	227	anti-parallel
Strand 6	A	109	119	anti-parallel
Strand 7	A	73	75	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	167	168	anti-parallel
Strand 3	A	205	206	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	276	277	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	30	34	parallel
Strand 3	B	196	200	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	218	227	anti-parallel
Strand 6	B	109	119	anti-parallel
Strand 7	B	73	75	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	167	168	anti-parallel
Strand 3	B	205	206	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	B	276	277	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	196	200	anti-parallel
Strand 4	C	149	155	anti-parallel
Strand 5	C	218	227	anti-parallel
Strand 6	C	109	119	anti-parallel
Strand 7	C	73	75	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	167	168	anti-parallel
Strand 3	C	205	206	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	273	first strand
Strand 2	C	276	277	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	30	34	parallel
Strand 3	D	196	200	anti-parallel
Strand 4	D	149	155	anti-parallel
Strand 5	D	218	227	anti-parallel
Strand 6	D	109	119	anti-parallel
Strand 7	D	73	75	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	167	168	anti-parallel
Strand 3	D	205	206	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	276	277	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	196	200	anti-parallel
Strand 4	E	149	155	anti-parallel
Strand 5	E	218	227	anti-parallel
Strand 6	E	109	119	anti-parallel
Strand 7	E	73	75	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	187	188	first strand
Strand 2	E	167	168	anti-parallel
Strand 3	E	205	206	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	13	first strand
Strand 2	F	30	34	parallel
Strand 3	F	196	200	anti-parallel
Strand 4	F	149	155	anti-parallel
Strand 5	F	218	227	anti-parallel
Strand 6	F	109	119	anti-parallel
Strand 7	F	73	75	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	187	188	first strand
Strand 2	F	167	168	anti-parallel
Strand 3	F	205	206	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	273	first strand
Strand 2	F	276	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WSB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WSB