Analysis of interatomic Contacts of Structural Units in PDB entry:
7WTD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WTD entry

There are 4 chains in PDB entry 7WTD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 495	ALA 1094
B	ASN 495	ALA 1094
C	GLU 33	GLU 1178
D	TYR 34	GLU 1178

There are148 helices in PDB entry 7WTD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	496	511	Right-handed alpha
Helix 2	AA2	A	540	549	Right-handed alpha
Helix 3	AA3	A	549	560	Right-handed alpha
Helix 4	AA4	A	571	577	Right-handed alpha
Helix 5	AA5	A	583	589	Right-handed alpha
Helix 6	AA6	A	590	598	Right-handed alpha
Helix 7	AA7	A	611	618	Right-handed alpha
Helix 8	AA8	A	622	634	Right-handed alpha
Helix 9	AA9	A	655	669	Right-handed alpha
Helix 10	AB1	A	682	697	Right-handed alpha
Helix 11	AB2	A	719	734	Right-handed alpha
Helix 12	AB3	A	748	761	Right-handed alpha
Helix 13	AB4	A	778	788	Right-handed alpha
Helix 14	AB5	A	809	817	Right-handed alpha
Helix 15	AB6	A	827	843	Right-handed alpha
Helix 16	AB7	A	849	854	Right-handed alpha
Helix 17	AB8	A	860	865	Right-handed alpha
Helix 18	AB9	A	867	882	Right-handed alpha
Helix 19	AC1	A	886	901	Right-handed alpha
Helix 20	AC2	A	907	924	Right-handed alpha
Helix 21	AC3	A	928	934	Right-handed alpha
Helix 22	AC4	A	941	949	Right-handed alpha
Helix 23	AC5	A	960	969	Right-handed alpha
Helix 24	AC6	A	977	982	Right-handed alpha
Helix 25	AC7	A	986	998	Right-handed alpha
Helix 26	AC8	A	1003	1013	Right-handed alpha
Helix 27	AC9	A	1013	1028	Right-handed alpha
Helix 28	AD1	A	1034	1040	Right-handed alpha
Helix 29	AD2	B	496	510	Right-handed alpha
Helix 30	AD3	B	541	548	Right-handed alpha
Helix 31	AD4	B	549	560	Right-handed alpha
Helix 32	AD5	B	571	578	Right-handed alpha
Helix 33	AD6	B	583	588	Right-handed alpha
Helix 34	AD7	B	590	598	Right-handed alpha
Helix 35	AD8	B	608	611	Right-handed 310
Helix 36	AD9	B	612	618	Right-handed alpha
Helix 37	AE1	B	622	629	Right-handed alpha
Helix 38	AE2	B	655	670	Right-handed alpha
Helix 39	AE3	B	682	697	Right-handed alpha
Helix 40	AE4	B	719	734	Right-handed alpha
Helix 41	AE5	B	748	763	Right-handed alpha
Helix 42	AE6	B	778	790	Right-handed alpha
Helix 43	AE7	B	809	817	Right-handed alpha
Helix 44	AE8	B	828	843	Right-handed alpha
Helix 45	AE9	B	844	846	Right-handed 310
Helix 46	AF1	B	860	865	Right-handed alpha
Helix 47	AF2	B	867	881	Right-handed alpha
Helix 48	AF3	B	886	902	Right-handed alpha
Helix 49	AF4	B	908	924	Right-handed alpha
Helix 50	AF5	B	927	934	Right-handed alpha
Helix 51	AF6	B	941	950	Right-handed alpha
Helix 52	AF7	B	960	969	Right-handed alpha
Helix 53	AF8	B	977	982	Right-handed alpha
Helix 54	AF9	B	986	999	Right-handed alpha
Helix 55	AG1	B	1003	1013	Right-handed alpha
Helix 56	AG2	B	1013	1028	Right-handed alpha
Helix 57	AG3	B	1034	1040	Right-handed alpha
Helix 58	AG4	C	46	59	Right-handed alpha
Helix 59	AG5	C	94	97	Right-handed 310
Helix 60	AG6	C	98	109	Right-handed alpha
Helix 61	AG7	C	124	134	Right-handed alpha
Helix 62	AG8	C	142	149	Right-handed alpha
Helix 63	AG9	C	151	162	Right-handed alpha
Helix 64	AH1	C	176	187	Right-handed alpha
Helix 65	AH2	C	210	227	Right-handed alpha
Helix 66	AH3	C	284	303	Right-handed alpha
Helix 67	AH4	C	332	341	Right-handed alpha
Helix 68	AH5	C	343	354	Right-handed alpha
Helix 69	AH6	C	356	361	Right-handed alpha
Helix 70	AH7	C	435	450	Right-handed alpha
Helix 71	AH8	C	458	468	Right-handed alpha
Helix 72	AH9	C	468	474	Right-handed alpha
Helix 73	AI1	C	477	481	Right-handed 310
Helix 74	AI2	C	497	511	Right-handed alpha
Helix 75	AI3	C	541	548	Right-handed alpha
Helix 76	AI4	C	549	559	Right-handed alpha
Helix 77	AI5	C	571	578	Right-handed alpha
Helix 78	AI6	C	586	589	Right-handed 310
Helix 79	AI7	C	590	598	Right-handed alpha
Helix 80	AI8	C	608	612	Right-handed 310
Helix 81	AI9	C	622	634	Right-handed alpha
Helix 82	AJ1	C	655	670	Right-handed alpha
Helix 83	AJ2	C	682	697	Right-handed alpha
Helix 84	AJ3	C	719	734	Right-handed alpha
Helix 85	AJ4	C	748	761	Right-handed alpha
Helix 86	AJ5	C	778	790	Right-handed alpha
Helix 87	AJ6	C	798	802	Right-handed 310
Helix 88	AJ7	C	809	817	Right-handed alpha
Helix 89	AJ8	C	829	843	Right-handed alpha
Helix 90	AJ9	C	844	846	Right-handed 310
Helix 91	AK1	C	849	854	Right-handed alpha
Helix 92	AK2	C	860	865	Right-handed alpha
Helix 93	AK3	C	867	881	Right-handed alpha
Helix 94	AK4	C	886	893	Right-handed alpha
Helix 95	AK5	C	893	901	Right-handed alpha
Helix 96	AK6	C	908	925	Right-handed alpha
Helix 97	AK7	C	927	934	Right-handed alpha
Helix 98	AK8	C	941	950	Right-handed alpha
Helix 99	AK9	C	960	968	Right-handed alpha
Helix 100	AL1	C	977	982	Right-handed alpha
Helix 101	AL2	C	987	998	Right-handed alpha
Helix 102	AL3	C	1003	1013	Right-handed alpha
Helix 103	AL4	C	1013	1027	Right-handed alpha
Helix 104	AL5	C	1034	1040	Right-handed alpha
Helix 105	AL6	D	46	59	Right-handed alpha
Helix 106	AL7	D	94	97	Right-handed 310
Helix 107	AL8	D	98	109	Right-handed alpha
Helix 108	AL9	D	124	134	Right-handed alpha
Helix 109	AM1	D	142	150	Right-handed alpha
Helix 110	AM2	D	151	162	Right-handed alpha
Helix 111	AM3	D	176	187	Right-handed alpha
Helix 112	AM4	D	209	228	Right-handed alpha
Helix 113	AM5	D	284	303	Right-handed alpha
Helix 114	AM6	D	332	340	Right-handed alpha
Helix 115	AM7	D	343	354	Right-handed alpha
Helix 116	AM8	D	356	361	Right-handed 310
Helix 117	AM9	D	435	450	Right-handed alpha
Helix 118	AN1	D	458	468	Right-handed alpha
Helix 119	AN2	D	468	474	Right-handed alpha
Helix 120	AN3	D	477	481	Right-handed 310
Helix 121	AN4	D	484	488	Right-handed 310
Helix 122	AN5	D	495	510	Right-handed alpha
Helix 123	AN6	D	541	548	Right-handed alpha
Helix 124	AN7	D	549	560	Right-handed alpha
Helix 125	AN8	D	571	577	Right-handed alpha
Helix 126	AN9	D	583	598	Right-handed alpha
Helix 127	AO1	D	608	617	Right-handed alpha
Helix 128	AO2	D	622	634	Right-handed alpha
Helix 129	AO3	D	655	670	Right-handed alpha
Helix 130	AO4	D	682	697	Right-handed alpha
Helix 131	AO5	D	719	734	Right-handed alpha
Helix 132	AO6	D	748	761	Right-handed alpha
Helix 133	AO7	D	778	790	Right-handed alpha
Helix 134	AO8	D	809	816	Right-handed alpha
Helix 135	AO9	D	827	843	Right-handed alpha
Helix 136	AP1	D	844	848	Right-handed 310
Helix 137	AP2	D	849	854	Right-handed alpha
Helix 138	AP3	D	867	881	Right-handed alpha
Helix 139	AP4	D	887	902	Right-handed alpha
Helix 140	AP5	D	907	925	Right-handed alpha
Helix 141	AP6	D	927	934	Right-handed alpha
Helix 142	AP7	D	941	950	Right-handed alpha
Helix 143	AP8	D	960	969	Right-handed alpha
Helix 144	AP9	D	977	982	Right-handed alpha
Helix 145	AQ1	D	986	998	Right-handed alpha
Helix 146	AQ2	D	1003	1013	Right-handed alpha
Helix 147	AQ3	D	1013	1028	Right-handed alpha
Helix 148	AQ4	D	1034	1040	Right-handed alpha

There are 22 sheets in PDB entry 7WTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	640	first strand
Strand 2	A	601	605	parallel
Strand 3	A	564	567	parallel
Strand 4	A	793	796	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	673	677	parallel
Strand 3	A	699	705	parallel
Strand 4	A	737	741	parallel
Strand 5	A	768	771	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1050	first strand
Strand 2	A	1058	1065	anti-parallel
Strand 3	A	1073	1080	anti-parallel
Strand 4	A	1083	1090	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	601	605	parallel
Strand 3	B	639	642	parallel
Strand 4	B	673	676	parallel
Strand 5	B	699	705	parallel
Strand 6	B	737	742	parallel
Strand 7	B	768	772	parallel
Strand 8	B	793	796	parallel
Strand 9	B	564	567	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1047	1051	first strand
Strand 2	B	1057	1065	anti-parallel
Strand 3	B	1073	1079	anti-parallel
Strand 4	B	1084	1090	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	62	67	parallel
Strand 3	C	39	42	parallel
Strand 4	C	113	115	parallel
Strand 5	C	137	138	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	191	195	anti-parallel
Strand 3	C	233	237	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	326	first strand
Strand 2	C	308	311	anti-parallel
Strand 3	C	245	251	anti-parallel
Strand 4	C	257	268	anti-parallel
Strand 5	C	273	277	anti-parallel
Strand 6	C	372	379	anti-parallel
Strand 7	C	425	433	anti-parallel
Strand 8	C	405	409	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	388	389	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	393	first strand
Strand 2	C	417	418	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	398	first strand
Strand 2	C	451	453	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	566	first strand
Strand 2	C	793	795	parallel
Strand 3	C	769	772	parallel
Strand 4	C	737	742	parallel
Strand 5	C	699	705	parallel
Strand 6	C	673	677	parallel
Strand 7	C	642	644	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	605	first strand
Strand 2	C	639	640	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1047	1053	first strand
Strand 2	C	1056	1065	anti-parallel
Strand 3	C	1073	1080	anti-parallel
Strand 4	C	1085	1090	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	85	first strand
Strand 2	D	62	67	parallel
Strand 3	D	39	42	parallel
Strand 4	D	113	115	parallel
Strand 5	D	137	138	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	207	first strand
Strand 2	D	191	195	anti-parallel
Strand 3	D	233	237	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	259	first strand
Strand 2	D	246	251	anti-parallel
Strand 3	D	308	311	anti-parallel
Strand 4	D	324	326	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	277	first strand
Strand 2	D	372	379	anti-parallel
Strand 3	D	425	433	anti-parallel
Strand 4	D	405	409	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	382	first strand
Strand 2	D	388	389	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	604	605	parallel
Strand 3	D	639	644	parallel
Strand 4	D	673	677	parallel
Strand 5	D	699	705	parallel
Strand 6	D	737	741	parallel
Strand 7	D	768	771	parallel
Strand 8	D	793	796	parallel
Strand 9	D	564	567	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1047	1051	first strand
Strand 2	D	1057	1065	anti-parallel
Strand 3	D	1073	1079	anti-parallel
Strand 4	D	1084	1090	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1112	1114	first strand
Strand 2	D	1172	1175	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WTD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WTD