Analysis of interatomic Contacts of Structural Units in PDB entry:
7WTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WTH entry

There are 3 chains in PDB entry 7WTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ILE 332LYS 528
L
 ALA 3LEU 108
H
 ILE 2SER 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7WTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
337 342Right-handed alpha
Helix 2
AA2
E
366 371Right-handed 310
Helix 3
AA3
E
386 390Right-handed 310
Helix 4
AA4
E
403 410Right-handed 310
Helix 5
AA5
H
65 67Right-handed 310
Helix 6
AA6
H
88 92Right-handed 310
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There are 8 sheets in PDB entry 7WTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
356 358first strand
Strand 2
E
395 397anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 362first strand
Strand 2
E
524 525parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
374 376first strand
Strand 2
E
433 436anti-parallel
Strand 3
E
510 512anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 23first strand
Strand 2
L
72 77anti-parallel
Strand 3
L
64 69anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
44 50first strand
Strand 2
L
36 41anti-parallel
Strand 3
L
87 93anti-parallel
Strand 4
L
100 101anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
80 84anti-parallel
Strand 4
H
69 73anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
35 41anti-parallel
Strand 5
H
48 54anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il