Analysis of interatomic Contacts of Structural Units in PDB entry:
7WUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7WUP entry

There are 2 chains in PDB entry 7WUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10ALA 407
B
 ALA 11ALA 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7WUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 32Right-handed alpha
Helix 2
AA2
A
37 56Right-handed alpha
Helix 3
AA3
A
57 81Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
105 119Right-handed alpha
Helix 7
AA7
A
136 140Right-handed 310
Helix 8
AA8
A
143 156Right-handed alpha
Helix 9
AA9
A
156 162Right-handed alpha
Helix 10
AB1
A
162 171Right-handed alpha
Helix 11
AB2
A
181 188Right-handed alpha
Helix 12
AB3
A
193 200Right-handed alpha
Helix 13
AB4
A
201 217Right-handed alpha
Helix 14
AB5
A
227 237Right-handed alpha
Helix 15
AB6
A
251 261Right-handed alpha
Helix 16
AB7
A
265 268Right-handed 310
Helix 17
AB8
A
274 285Right-handed alpha
Helix 18
AB9
A
316 320Right-handed 310
Helix 19
AC1
A
321 336Right-handed alpha
Helix 20
AC2
A
354 366Right-handed alpha
Helix 21
AC3
A
374 384Right-handed alpha
Helix 22
AC4
B
12 32Right-handed alpha
Helix 23
AC5
B
37 56Right-handed alpha
Helix 24
AC6
B
57 81Right-handed alpha
Helix 25
AC7
B
82 87Right-handed alpha
Helix 26
AC8
B
95 103Right-handed alpha
Helix 27
AC9
B
105 119Right-handed alpha
Helix 28
AD1
B
136 141Right-handed 310
Helix 29
AD2
B
143 155Right-handed alpha
Helix 30
AD3
B
155 162Right-handed alpha
Helix 31
AD4
B
162 171Right-handed alpha
Helix 32
AD5
B
181 187Right-handed alpha
Helix 33
AD6
B
193 199Right-handed alpha
Helix 34
AD7
B
203 212Right-handed alpha
Helix 35
AD8
B
227 237Right-handed alpha
Helix 36
AD9
B
251 261Right-handed alpha
Helix 37
AE1
B
265 268Right-handed 310
Helix 38
AE2
B
274 285Right-handed alpha
Helix 39
AE3
B
316 320Right-handed 310
Helix 40
AE4
B
321 336Right-handed alpha
Helix 41
AE5
B
354 366Right-handed alpha
Helix 42
AE6
B
374 384Right-handed alpha
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There are 6 sheets in PDB entry 7WUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
122 125anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
270 273parallel
Strand 3
A
243 246parallel
Strand 4
A
310 314parallel
Strand 5
A
341 349parallel
Strand 6
A
372 373parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
270 273parallel
Strand 3
A
243 246parallel
Strand 4
A
310 314parallel
Strand 5
A
341 349parallel
Strand 6
A
399 406anti-parallel
Strand 7
A
386 393anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
129 131anti-parallel
Strand 3
B
123 125anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 296first strand
Strand 2
B
270 273parallel
Strand 3
B
243 246parallel
Strand 4
B
310 314parallel
Strand 5
B
341 349parallel
Strand 6
B
372 373parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 296first strand
Strand 2
B
270 273parallel
Strand 3
B
243 246parallel
Strand 4
B
310 314parallel
Strand 5
B
341 349parallel
Strand 6
B
399 406anti-parallel
Strand 7
B
386 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il