Analysis of interatomic Contacts of Structural Units in PDB entry:
7WUQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WUQ entry

There are 5 chains in PDB entry 7WUQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	LEU 7	ASN 340
G	SER 8	ARG 62
N	GLN 1	SER 127
R	HIS 597	TYR 885

There are 28 helices in PDB entry 7WUQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	39	Right-handed alpha
Helix 2	AA2	A	234	239	Right-handed 310
Helix 3	AA3	A	264	278	Right-handed alpha
Helix 4	AA4	A	293	304	Right-handed alpha
Helix 5	AA5	A	312	316	Right-handed 310
Helix 6	AA6	A	331	351	Right-handed alpha
Helix 7	AA7	A	370	391	Right-handed alpha
Helix 8	AA8	B	8	25	Right-handed alpha
Helix 9	AA9	B	29	34	Right-handed alpha
Helix 10	AB1	G	9	24	Right-handed alpha
Helix 11	AB2	G	29	44	Right-handed alpha
Helix 12	AB3	N	53	56	Right-handed 310
Helix 13	AB4	R	600	605	Right-handed 310
Helix 14	AB5	R	613	645	Right-handed alpha
Helix 15	AB6	R	646	649	Right-handed 310
Helix 16	AB7	R	651	676	Right-handed alpha
Helix 17	AB8	R	682	716	Right-handed alpha
Helix 18	AB9	R	725	735	Right-handed alpha
Helix 19	AC1	R	735	749	Right-handed alpha
Helix 20	AC2	R	750	753	Right-handed 310
Helix 21	AC3	R	774	782	Right-handed alpha
Helix 22	AC4	R	782	795	Right-handed alpha
Helix 23	AC5	R	797	810	Right-handed alpha
Helix 24	AC6	R	820	835	Right-handed alpha
Helix 25	AC7	R	836	842	Right-handed 310
Helix 26	AC8	R	848	860	Right-handed alpha
Helix 27	AC9	R	862	872	Right-handed alpha
Helix 28	AD1	R	875	885	Right-handed alpha

There are 10 sheets in PDB entry 7WUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	43	45	parallel
Strand 4	A	243	246	parallel
Strand 5	A	286	289	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	120	125	anti-parallel
Strand 3	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	210	212	anti-parallel
Strand 4	B	218	220	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	295	297	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	6	7	first strand
Strand 2	N	18	22	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	93	95	anti-parallel
Strand 4	N	34	40	anti-parallel
Strand 5	N	44	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WUQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WUQ