Analysis of interatomic Contacts of Structural Units in PDB entry:
7WUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WUW entry

There are 4 chains in PDB entry 7WUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 20	ALA 216
B	LEU 20	GLU 217
C	VAL 7	SER 336
D	VAL 7	SER 336

There are 28 helices in PDB entry 7WUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	40	Right-handed 310
Helix 2	AA2	A	47	54	Right-handed 310
Helix 3	AA3	A	66	68	Right-handed 310
Helix 4	AA4	B	36	40	Right-handed 310
Helix 5	AA5	B	47	54	Right-handed 310
Helix 6	AA6	B	66	68	Right-handed 310
Helix 7	AA7	C	16	29	Right-handed alpha
Helix 8	AA8	C	32	39	Right-handed alpha
Helix 9	AA9	C	63	69	Right-handed alpha
Helix 10	AB1	C	86	95	Right-handed alpha
Helix 11	AB2	C	106	108	Right-handed 310
Helix 12	AB3	C	149	157	Right-handed alpha
Helix 13	AB4	C	191	208	Right-handed alpha
Helix 14	AB5	C	217	231	Right-handed alpha
Helix 15	AB6	C	235	271	Right-handed alpha
Helix 16	AB7	C	272	303	Right-handed alpha
Helix 17	AB8	C	306	336	Right-handed alpha
Helix 18	AB9	D	16	29	Right-handed alpha
Helix 19	AC1	D	32	39	Right-handed alpha
Helix 20	AC2	D	63	69	Right-handed alpha
Helix 21	AC3	D	86	95	Right-handed alpha
Helix 22	AC4	D	106	108	Right-handed 310
Helix 23	AC5	D	149	157	Right-handed alpha
Helix 24	AC6	D	191	208	Right-handed alpha
Helix 25	AC7	D	217	231	Right-handed alpha
Helix 26	AC8	D	235	271	Right-handed alpha
Helix 27	AC9	D	272	303	Right-handed alpha
Helix 28	AD1	D	306	336	Right-handed alpha

There are 16 sheets in PDB entry 7WUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	21	26	anti-parallel
Strand 3	B	30	34	anti-parallel
Strand 4	B	196	209	anti-parallel
Strand 5	B	94	97	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	21	26	anti-parallel
Strand 3	B	30	34	anti-parallel
Strand 4	B	196	209	anti-parallel
Strand 5	B	108	117	anti-parallel
Strand 6	B	175	182	anti-parallel
Strand 7	B	154	158	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	196	209	anti-parallel
Strand 3	A	108	117	anti-parallel
Strand 4	A	175	182	anti-parallel
Strand 5	A	154	158	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	196	209	anti-parallel
Strand 3	A	30	34	anti-parallel
Strand 4	B	21	23	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	63	64	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	80	83	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	106	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	121	129	anti-parallel
Strand 4	A	134	141	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	168	169	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	63	64	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	80	83	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	106	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	134	141	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	168	169	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	215	216	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	80	first strand
Strand 2	C	177	183	anti-parallel
Strand 3	C	100	104	anti-parallel
Strand 4	C	120	128	anti-parallel
Strand 5	C	132	137	anti-parallel
Strand 6	C	143	148	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	215	216	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	80	first strand
Strand 2	D	177	183	anti-parallel
Strand 3	D	100	104	anti-parallel
Strand 4	D	120	128	anti-parallel
Strand 5	D	132	137	anti-parallel
Strand 6	D	143	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WUW