Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7WVB entry

There are 4 chains in PDB entry 7WVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	HIS 335
B	ASP 8	SER 336
C	ASP 10	SER 336
D	ASP 10	SER 336

There are 48 helices in PDB entry 7WVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed alpha
Helix 2	AA2	A	30	52	Right-handed alpha
Helix 3	AA3	A	74	89	Right-handed alpha
Helix 4	AA4	A	107	109	Right-handed 310
Helix 5	AA5	A	149	154	Right-handed 310
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	213	220	Right-handed 310
Helix 8	AA8	A	221	233	Right-handed alpha
Helix 9	AA9	A	248	260	Right-handed alpha
Helix 10	AB1	A	281	292	Right-handed alpha
Helix 11	AB2	A	302	306	Right-handed 310
Helix 12	AB3	A	321	335	Right-handed alpha
Helix 13	AB4	B	13	20	Right-handed alpha
Helix 14	AB5	B	31	51	Right-handed alpha
Helix 15	AB6	B	73	89	Right-handed alpha
Helix 16	AB7	B	107	109	Right-handed 310
Helix 17	AB8	B	149	154	Right-handed 310
Helix 18	AB9	B	156	160	Right-handed 310
Helix 19	AC1	B	213	220	Right-handed 310
Helix 20	AC2	B	221	233	Right-handed alpha
Helix 21	AC3	B	248	260	Right-handed alpha
Helix 22	AC4	B	281	292	Right-handed alpha
Helix 23	AC5	B	302	306	Right-handed 310
Helix 24	AC6	B	321	335	Right-handed alpha
Helix 25	AC7	C	13	20	Right-handed alpha
Helix 26	AC8	C	31	52	Right-handed alpha
Helix 27	AC9	C	73	89	Right-handed alpha
Helix 28	AD1	C	107	109	Right-handed 310
Helix 29	AD2	C	149	154	Right-handed 310
Helix 30	AD3	C	156	160	Right-handed 310
Helix 31	AD4	C	213	220	Right-handed 310
Helix 32	AD5	C	221	233	Right-handed alpha
Helix 33	AD6	C	248	260	Right-handed alpha
Helix 34	AD7	C	281	292	Right-handed alpha
Helix 35	AD8	C	302	306	Right-handed 310
Helix 36	AD9	C	321	335	Right-handed alpha
Helix 37	AE1	D	13	20	Right-handed alpha
Helix 38	AE2	D	31	51	Right-handed alpha
Helix 39	AE3	D	74	89	Right-handed alpha
Helix 40	AE4	D	107	109	Right-handed 310
Helix 41	AE5	D	149	154	Right-handed 310
Helix 42	AE6	D	156	160	Right-handed 310
Helix 43	AE7	D	213	220	Right-handed 310
Helix 44	AE8	D	221	233	Right-handed alpha
Helix 45	AE9	D	248	260	Right-handed alpha
Helix 46	AF1	D	281	292	Right-handed alpha
Helix 47	AF2	D	302	306	Right-handed 310
Helix 48	AF3	D	321	335	Right-handed alpha

There are 8 sheets in PDB entry 7WVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	111	122	parallel
Strand 4	A	133	141	anti-parallel
Strand 5	A	162	168	anti-parallel
Strand 6	A	173	178	anti-parallel
Strand 7	A	181	188	anti-parallel
Strand 8	A	193	198	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	209	211	parallel
Strand 3	A	262	265	parallel
Strand 4	A	317	320	anti-parallel
Strand 5	A	295	297	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	111	122	parallel
Strand 4	B	134	141	anti-parallel
Strand 5	B	162	168	anti-parallel
Strand 6	B	172	178	anti-parallel
Strand 7	B	181	188	anti-parallel
Strand 8	B	193	201	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	209	211	parallel
Strand 3	B	262	265	parallel
Strand 4	B	317	320	anti-parallel
Strand 5	B	295	297	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	111	122	parallel
Strand 4	C	133	141	anti-parallel
Strand 5	C	162	168	anti-parallel
Strand 6	C	172	178	anti-parallel
Strand 7	C	181	187	anti-parallel
Strand 8	C	194	198	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	209	211	parallel
Strand 3	C	262	265	parallel
Strand 4	C	317	320	anti-parallel
Strand 5	C	295	297	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	105	first strand
Strand 2	D	92	97	anti-parallel
Strand 3	D	111	119	parallel
Strand 4	D	134	141	anti-parallel
Strand 5	D	162	168	anti-parallel
Strand 6	D	172	178	anti-parallel
Strand 7	D	181	188	anti-parallel
Strand 8	D	193	198	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	209	211	parallel
Strand 3	D	262	265	parallel
Strand 4	D	317	320	anti-parallel
Strand 5	D	295	297	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7WVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7WVB